RetrogeneDB ID:
retro_ecab_259
Organism:
Horse ( Equus_caballus )
Location:
11:14594937-14595295 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.07 %
Coverage:
96.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_259
ATGTCTCCCGCAAAGAAGGGTGGCGAGAAGAAGAAGGGCCGTTCTGCCACCAACGAGGTG
GTGACCAGAGAATACACCATCACATCCTCAAGCGCATACGTGGAGCTGGCGTCGAGAAGC
GTGCCCCTTGGGCACTCAAAGAGATCCGGAAATTTGCCATGAAGGAGATGGGAGCTCCAG
ATGTGTGAATTGACACCAGGCTCAACAAAGCTGTCTGGCCAAAGGAATAAGGAATGTCCC
TTACCGCATCCGTGTGCGGTTGTCCAGAAAACGCAATGAGGATGAAGATTCACAAGACAA
ACTCTATACGTTGGTTACCTGTGTACCTGTCACCACTTTCAAAAATCTACAGACAATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPAKKGGEKKKGRSAINEVVTREYTI-NIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVW-AKGIRNVPYRIRVRLSRKRNEDEDS
M.PAKKGGEKKKGRSA.NEVVTREYTI..I.KRI.G.G..KRAP.ALKEIRKFAMKEMG.PDV.IDTRLNKAVW.AKGIRNVPYRIRVRLSRKRNEDEDS
Retrocopy
MSPAKKGGEKKKGRSATNEVVTREYTI/HILKRIRGAGVEKRAPWALKEIRKFAMKEMGAPDV*IDTRLNKAVW/AKGIRNVPYRIRVRLSRKRNEDEDS


Parental protein
PNKLYTLVTYVPVTTFKNLQTV
..KLYTLVT.VPVTTFKNLQT.
Retrocopy
QDKLYTLVTCVPVTTFKNLQTM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide