RetrogeneDB ID:
retro_ecab_26
Organism:
Horse ( Equus_caballus )
Location:
2:71509585-71509993 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
94.81 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_26
ATGGCTGTCCTCAGACCCCTTGTGAAGCCCAAGATCGTCAAAAAGAGGACCAAGAAGTTC
ATTCGGCACCAGTCAGACCGATATGTCAAAATTAAGCATAACTGGCAGAAACCCAGAGGC
ATTGACAACAGGGTGCGCAGAAGATTCAAGGGCCAGATCTTGATGCCCAACATTGGTTAT
GGGAGCAATAAGAAAACAAAGCACATGCTGCCCAGTGGCTTCCAGAAGTTCCTGGTCCAC
AATGTCAAGGAGCTTGAAGTGCTGCTGATGTGCAACAAATCATGCTGTGCTGAGACTGCT
CACAACGTCTCCTCCAAGAACCACAAAGCCATCGTGGAAAGAGCAGCCCAGCTGGCTATC
AGAATCACCAATCCCAATGCCAGGCTGCGCAGCGAAGAAAACGAATAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.41
SRP021940_cerebellum 0.05
SRP021940_embryo 0.67
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.44
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIA
MA.LRPLVKPKIVKKRTKKFIRHQSDRYVKIK.NW.KPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGF.KFLVHNVKELEVLLMCNKS.CAE.A
Retrocopy
MAVLRPLVKPKIVKKRTKKFIRHQSDRYVKIKHNWQKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFQKFLVHNVKELEVLLMCNKSCCAETA


Parental protein
HNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE
HNVSSKN.KAIVERAAQLAIRITNPNARLRSEENE
Retrocopy
HNVSSKNHKAIVERAAQLAIRITNPNARLRSEENE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide