RetrogeneDB ID:
retro_ecab_261
Organism:
Horse ( Equus_caballus )
Location:
11:16868602-16869001 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.94 %
Coverage:
66.5 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
NDFIP1
Parental gene aliases:
No gene alias available
Parental gene description:
Nedd4 family interacting protein 1 [Source:HGNC Symbol;Acc:17592]

Genomic region (view in browser)





>retro_ecab_261
GAGGAAGAGCCCAGGGAAACTGAACAGGCCACAGATGCTGCTCCTCCACCTTATAGCAGC
ATCTCTGCAGAGTACAGCATATTTTGACTACAAAGATGAGTCTGAATTTCCAAAGCCTCC
ATCTTATAATGTGGCTACAACACTGTCCAGTTTTGATGAAGCCGAGAGAACCACGGCTGA
AGCTGCCATACCTTTGGTTCCTGGAAGAGATGAGGATTTTGTGGGTCAGGCTGATTTTGA
TGATGCTGACCAAATGAACATAGGAAATGATGAGATTTTTCTTGTTAACTTTTTTTCATG
GCATTCCTCTTTAACTGGATCAGGTTTTTCGTGTCTTTTTGCCTAACCACCTCAGCTGCA
GGAAGGTATGGAGCCATTTCAGAATTTGGTCTCTTTCTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EEEPGEPEQAAGDAPPPYSS-ISAESAAYFDYKDESGFPKPPSYNVATTLPTYDEAERTKAEATIPLVPGRDEDFVGRDDFDDADQLRIGNDGIF-MLTF
EEEP.E.EQA..DA.PP..S..S..S.AYFDYKDES.FPKPPSYNVATTL...DEAERT.AEA.IPLVPGRDEDFVG..DFDDADQ..IGND.IF..LTF
Retrocopy
EEEPRETEQAT-DAAPPPYS\ASLQSTAYFDYKDESEFPKPPSYNVATTLSSFDEAERTTAEAAIPLVPGRDEDFVGQADFDDADQMNIGNDEIF\LLTF


Parental protein
F-MAFLFNWIGFFLSFCLTTSAAGRYGAISGFGLSL
F.MAFLFNWI.FF.SFCLTTSAAGRYGAIS.FGL.L
Retrocopy
F\MAFLFNWIRFFVSFCLTTSAAGRYGAISEFGLFL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide