RetrogeneDB ID:
retro_ecab_263
Organism:
Horse ( Equus_caballus )
Location:
11:23463092-23463469 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.46 %
Coverage:
84.67 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS19
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S19 [Source:HGNC Symbol;Acc:10402]

Genomic region (view in browser)





>retro_ecab_263
GCTCTGGCAGCCTTTCTCAAAAAGTCCAGGAAGCTGAAAATCCCTCAATGGGTAGACACT
GTGAAGCTGGCCGAGCATAAAGAGCTTACTCCCCTCGATGAACTGGTTCTACACATGAGC
TTCTTCCGCATCACAGCGCCTGTTCCTCCCTGGTAGCCCTTGGGTTGGCTCCCTGACCAA
GACCTATGGGGGATGTCAGAGAAACAACGTCATAGCAACCACTTCAGCCAAGGCTCCGAG
AGCACGGCCCACCAGGTCCTCCAAGCCCTGCAGGGCTGAAAATAGTGGAAAAGGACTAAG
ATGGAGGCTGCAAACTGACACCTCAGGGACAGAGAGGGCTGGACAGAATTGCCAGACAGG
TAGCAGCTGCCAAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ALAAFLKKSGKLKVPEWVDTVKLAKHKE-LAPYDENWFYTRAASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPS-HFSRGSKSVARRVLQALEG-LKMV
ALAAFLKKS.KLK.P.WVDTVKLA.HKE.L.P...NWFYT.A.S....L.L.G...VGS.TK.YGG.QRN.V....HFS.GS.S.A..VLQAL.G.LK.V
Retrocopy
ALAAFLKKSRKLKIPQWVDTVKLAEHKE\LLP-SMNWFYT*ASSASQRLFLPGSPWVGSLTKTYGGCQRNNVIAT/HFSQGSESTAHQVLQALQG/LKIV


Parental protein
EKDQDGGRKLTPQGQRDLDRIAGQVAAANK
EKD.DGG.KLTPQGQR.LDRIA.QVAAA.K
Retrocopy
EKD*DGGCKLTPQGQRGLDRIARQVAAAKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide