RetrogeneDB ID:
retro_ecab_265
Organism:
Horse ( Equus_caballus )
Location:
11:34919425-34919732 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.09 %
Coverage:
99.06 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_265
ATGGGGAACGTTCCTAAAACCCTCCAAACTTTCTGTAAGAAGTGTGGCAAGCACCAATCC
ACAAAGTGACACAGTACAAGGAGGGCAAGAGTCCTCTTTGTGCCCATGGAAAGCGGCATT
ATGACAGGAAGCAGAGTGGCTGTGGTGGGTAGACTAAGTCAATTTTCCCCAAAAAGGCTA
AATCTGCAAAAATGGTGCTGAGCTTCAATGCATTGAGCCCTGTTGGAGATCTCAGAGAAT
GTTGGCTACTAAGAGATGTAAGCATTTTGAACTGGGAGGAGATCAGAGAAAGGGCCAAGT
GATCCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVNVPKTRRTFCKKCGKHQP-HKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEP-NCRSKRMLAIKRCKHFELGGDKK
M.NVPKT..TFCKKCGKHQ..HKVTQYK.GK..L.A.GKR.YDRKQSG.GG.TK.IF.KKAK...K.VL......P...RS.RMLA.KRCKHFELGGD..
Retrocopy
MGNVPKTLQTFCKKCGKHQS/HKVTQYKEGKSPLCAHGKRHYDRKQSGCGG*TKSIFPKKAKSA-KMVLSFNALSP/CWRSQRMLATKRCKHFELGGD-Q


Parental protein
RKGQVIQ
RKGQVIQ
Retrocopy
RKGQVIQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide