RetrogeneDB ID:
retro_ecab_266
Organism:
Horse ( Equus_caballus )
Location:
11:42589674-42590085 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
81.02 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_266
ATGGCCGGTACAAAGCAGACTGGCCACAAATCAACGGGTAGTAAAGCACCAAGGAAGCAA
CTGGCTACAAAAGCCGCTTGCAAGAGTGTGCCCCCTACTGGCAGGGTGAAGAAACCTCAT
TGTTACAAGCCTGGTACTGAGGTGCTCTGTGAAATTAGACGTTATCTGAAGTCCCCTGAA
CTTCTGATTGACAAACTTCCTTTCCAGCATCTGGTGCGAGAAATTGCTCAGGACTTCAAA
ACAGATCTATGCTTCCAAAGCGCAGCTATTGGTGCTTTGCAGGAAGCAAGTGAGGCCTAT
CTGGTATGCCTTTTTGAAGACACCAACCTGTGTGCTATCCATGCCAAATGTGTAATGATG
ATGCCAAAAGACATCCAGCTAGCAGCACGCCACATACATGGAGAATGTGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.41
SRP021940_cerebellum 1.59
SRP021940_embryo 1.51
SRP021940_placental_villous 1.88
SRP021940_synovial_membrane 1.28
SRP021940_testis 0.95

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAY
MA.TKQT..KSTG.KAPRKQLATKAA.KS.P.TG.VKKPH.Y.PGT..L.EIRRY.KS.ELLI.KLPFQ.LVREIAQDFKTDL.FQSAAIGALQEASEAY
Retrocopy
MAGTKQTGHKSTGSKAPRKQLATKAACKSVPPTGRVKKPHCYKPGTEVLCEIRRYLKSPELLIDKLPFQHLVREIAQDFKTDLCFQSAAIGALQEASEAY


Parental protein
LVGLFEDTNLCAIHAKRVTIMPKDIQL-ARRIRGERA
LV.LFEDTNLCAIHAK.V..MPKDIQL.AR.I.GE.A
Retrocopy
LVCLFEDTNLCAIHAKCVMMMPKDIQLAARHIHGECA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide