RetrogeneDB ID:
retro_ecab_268
Organism:
Horse ( Equus_caballus )
Location:
11:49183129-49183443 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
78.3 %
Coverage:
99.06 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_268
ATGAATGTTCCTAAAATCCACTGGACTTTCAGTAAGAAGTGTGGCAAGCACCAACCCCAC
AAAATGACACAGTCCAAGAAGGGCAGGGATTCCCGGGATGCTCAGGGAAAGCGGCATTAT
GACAAGAGGCAGAGTGGCTATGGTGGTCAGACCAAGCTGATTTTCCAAAAAAGGCTAAAA
CTACAAAGAAGATTGTGCTGAAGCTTGCATGTGTCGAGCCCAACCGCAGATTTGAGAGAA
TGCTGGCTATCAAGAGATGCAAGCATTTTGAACTGGGAGGAGACAGGAGGAGAAAGGGCC
AAGTGATCCAGTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.15
SRP021940_embryo 0.24
SRP021940_placental_villous 0.18
SRP021940_synovial_membrane 0.39
SRP021940_testis 0.24

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFR-KKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRK
.NVPK...TF.KKCGKHQPHK.TQ.KKG.DS..AQGKR.YD..QSGYGGQTK.IF..KKAKTTKKIVL.L.CVEPN.R..RMLAIKRCKHFELGGD..RK
Retrocopy
MNVPKIHWTFSKKCGKHQPHKMTQSKKGRDSRDAQGKRHYDKRQSGYGGQTKLIFQ/KKAKTTKKIVLKLACVEPNRRFERMLAIKRCKHFELGGDRRRK


Parental protein
GQVIQF
GQVIQF
Retrocopy
GQVIQF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide