RetrogeneDB ID:
retro_ecab_270
Organism:
Horse ( Equus_caballus )
Location:
11:60508261-60509389 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.96 %
Coverage:
72.36 %
Frameshifts:
5
Stop codons:
1


Parental gene:
Parental gene symbol:
PPAT
Parental gene aliases:
No gene alias available
Parental gene description:
amidophosphoribosyltransferase [Source:RefSeq peptide;Acc:NP_001098786]

Genomic region (view in browser)





>retro_ecab_270
GGGAAAATAGCTGTGGCACATAATGGCGAATTGATAAATGCTGCTCAATTAAGGGAAAAG
CTTCTGCGTCATGGTATTGGTCTGTCAAGAAGTTCCGATAGGGAAATGATTACCCAGTTA
CTGGCATATACCTCACCTCAGGAACAAGATGACACCCCAGACTGGGTGGCAAGGATTAAA
AACTTAATGAAGGAAGCACCTACAGCATACTCCCTGCTTATAATGCACAGAGATGTTATT
TATGCAGTACGAGATCCTTATGGAAATTGTCCTCTATGCATTGGTCGTCTTATTCCTATA
TCTGATATAAATGATAAAGAGAAAAACTCTTCAGAAACCGAAGGATGGGCGGTATCTTCA
GAACCTTGTAGCTTTTTATCTGTTGGTGCAAGATATTACCGTGAAGTCTTACCTGGAGAA
ATTGTGAAAATATCCAGACATAATGTCCAAACACTTGATACTATACCAAGGTCTGAAGGA
AAACCAATGGCTTTTTGTATTTTTGAATATGTTTATTTTGCAAGACCAGATAGTATATTT
GAAATCCAAATGGTTTATACAGTGAGGTACTGTTGTGGTCAGCAGCTGGCAATTGAACCA
CCTGTGGATGCAGATTTGGTTAGCACCGTTCTGAATCTGCTACACCCGCTGCTCTTGGTT
ATGCAGGAAGGTGTGGGCTTCCCTATGTGGAGGTGCTGTGTAAAACCCGGTATGTAGGAA
GAACCTTCATTCAGCCAAACATGAAGTTAAGACAACTTAGTGTTGCAAAAAAAATTTGGA
GTAGTGTCAGACAACTTCAAAGGCAAAGGAATTGTTCTTGTAGATGATTGGATTGTAAGA
GACAATATGACCTCACCCATAATCAAATTGCTCAAAGAATCTGGTGCAAAAGAGGTACAC
ATTTGAGTAACTTCACCACCAATTAGATATCCATGCTTCATGGGAATAAACATACCAGCA
AAAGAAGAGCTTTTGCCAATAAAGCAGAATTTGAACATCTTGCAGAATATCTAGGAGCAA
ACAGTGTTGTGTATCTGTCAGTAGAAGGACTGGTTTCATCTGTACGAGAAGGGATAAAAC
AAAGAATAGAAAGAGAAAATGCAAGATATTATGATTCAAGAAAATGGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKIAVAHNGELINAAHLRRKLLRHGIGLSTSSDSEMITQLLAYTPPQEQDDTPDWVARIKNLMKEAPTAYSLLIMHRDVIYAVRDPYGNRPLCIGRLIPI
GKIAVAHNGELINAA.LR.KLLRHGIGLS.SSD.EMITQLLAYT.PQEQDDTPDWVARIKNLMKEAPTAYSLLIMHRDVIYAVRDPYGN.PLCIGRLIPI
Retrocopy
GKIAVAHNGELINAAQLREKLLRHGIGLSRSSDREMITQLLAYTSPQEQDDTPDWVARIKNLMKEAPTAYSLLIMHRDVIYAVRDPYGNCPLCIGRLIPI


Parental protein
SDINDKEKKSSETEGWVVSSESCSFLSIGARYYREVLPGEIVEISRHNVQTLDIIPRSEGNPMAFCIFEYVYFARPDSIFENQMVYTVRYRCGQQLAIEA
SDINDKEK.SSETEGW.VSSE.CSFLS.GARYYREVLPGEIV.ISRHNVQTLD.IPRSEG.PMAFCIFEYVYFARPDSIFE.QMVYTVRY.CGQQLAIE.
Retrocopy
SDINDKEKNSSETEGWAVSSEPCSFLSVGARYYREVLPGEIVKISRHNVQTLDTIPRSEGKPMAFCIFEYVYFARPDSIFEIQMVYTVRYCCGQQLAIEP


Parental protein
PVDADLVSTV-PESATPAALGYAGKCGLPYVEVLCKNRYVGRTFIQPNMRLRQLGV-AKKFGVLSDNFKDKRIVLVDDSIVRGNTISPIIKLLKESGAKE
PVDADLVSTV..ESATPAALGYAG.CGLPYVEVLCK.RYVGRTFIQPNM.LRQL.V....FGV.SDNFK.K.IVLVDD.IVR.N..SPIIKLLKESGAKE
Retrocopy
PVDADLVSTV/SESATPAALGYAGRCGLPYVEVLCKTRYVGRTFIQPNMKLRQLSV\XXXFGVVSDNFKGKGIVLVDDWIVRDNMTSPIIKLLKESGAKE


Parental protein
VHIRVASPPIRYPCFMGINIPTKEELI-ANKPEFEHLAEYLGANSVVYLSVEGLVSSVREGI-KLKKKK-EKKQDIIIQENG
VHI.V.SPPIRYPCFMGINIP.KEEL..ANK.EFEHLAEYLGANSVVYLSVEGLVSSVREGI.K.K..K.EK.QDI.IQENG
Retrocopy
VHI*VTSPPIRYPCFMGINIPAKEELL/ANKAEFEHLAEYLGANSVVYLSVEGLVSSVREGI/KTKNRK/EKMQDIMIQENG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide