RetrogeneDB ID:
retro_ecab_273
Organism:
Horse ( Equus_caballus )
Location:
12:18824505-18824995 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.56 %
Coverage:
72.85 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
MCUR1
Parental gene aliases:
No gene alias available
Parental gene description:
mitochondrial calcium uniporter regulator 1 [Source:HGNC Symbol;Acc:21097]

Genomic region (view in browser)





>retro_ecab_273
TTGGTCAAGATTATGGTAGGCAACATGAATATCGCCTACAAAAGATATGGTCACCATGGT
CGCCATGCAGTAGCATATAATTCCACAGCAAATAATGTCTCAGATTGCTAATGTGAAAAA
GGGTATGATTATTTTGGAGAAGAGCAAATTTTCATTTCTCAGAGCATAAAATGAGAAAAT
AAAACTTGAACTACATCAGTTAAAATAACAAGTGATGGATGAACTGATCAAAGTCCAAAA
AGATGTCAAATTAGACGTCAGTCTAGAAAAGGGCAGAGTAAAAGAACTATATTCCTTGAC
CAAAAAGAAGCTGCTAGAAATGCGGACACAAATGGTGGCAGTGCATACCCAACAAGATCA
GGCTCTCACCCAGACAGACAGGAAGACAGACGCTGAGGTTGCTGGCCTCAAAACCATACT
TGTGTCACAGAAGCTTAATAATATTAAATATTTAGCAGGGTCTATATTTACATGCCTAAC
ATCGGCTGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LVKIVEANMSIVYK-DMVTK--MQQEITLQQIMSQIANVKKDMIILEKSEFSALRAENEKIKLELHRLKQQMMDEVVKVRTDTKLDFNLEKSRVKELYSL
LVKI...NM.I.YK.DMVT...MQ..I..QQIMSQIANVKK.MIILEKS.FS.LRA.NEKIKLELH.LK.Q.MDE..KV..D.KLD..LEK.RVKELYSL
Retrocopy
LVKIMVGNMNIAYK\DMVTMVAMQ*HIIPQQIMSQIANVKKGMIILEKSKFSFLRA*NEKIKLELHQLK*QVMDELIKVQKDVKLDVSLEKGRVKELYSL


Parental protein
NERKLLEMRTEMVALHAQQDRAVTQTDRKIDTEVAGLKTMLESHKLDNIKYLAGSVFTCLTVAL
...KLLEMRT.MVA.H.QQD.A.TQTDRK.D.EVAGLKT.L.S.KL.NIKYLAGS.FTCLT.A.
Retrocopy
TKKKLLEMRTQMVAVHTQQDQALTQTDRKTDAEVAGLKTILVSQKLNNIKYLAGSIFTCLTSAV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide