RetrogeneDB ID:
retro_ecab_274
Organism:
Horse ( Equus_caballus )
Location:
12:9018995-9019693 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
56.17 %
Coverage:
90.23 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_274
AGTTCTGGAGTTACTTCACAAGAGACTGAAACTTTAAAGAACCAATCAGAAATACTAGAG
ATGAAAAACACAATGGACCAGATAAAACAGAATATGGATTCCCTGAATGCCCGTGTGGAC
GCCATAGAGGAGCAAATCAGCATAACTGAAGATAGGTTGAACGGCTCCAGACAGAGGAAG
AGAGAGACTAAAGGACTAAAAAGGAATGAAGAAAATCTCCGAGAAATAGCCAACTTAACG
AGCAAATGCAAAGTAAGAATAAGTGGAATCCCTGAGGGTGACGAAAAGGAGAATGGAACA
GAAAGCGTGGTCAAAGAAATAGTAGCAGAGAACTTCCCAAATCTAGGGAATGAGAGAGAA
AGGTGGGTGGAGGAAGCTTTCAGGTCTCCTACATATGTCAATGTAAAAAGACCTACTGCA
AGGCATATAGTAGTAAAACTGGCAAAAGTGAATGACAAAGAAAGAATACTTAGGGCAGCA
AGGCAGAAGAAAATAACAAAGGAACCACTGTCAGACTTTCAGAGGATTTCTCTGCAGAAA
CCTTACAAGCCAGGGGAGAATGGAATGACATATTCAAAACTTCAAAAGATAACAATCTTC
AGCCAAGAATACTCTATCCAGCAAAAATATCCTTCAGATATGGAGAAATGAAACCTTCCC
CAAAAAAACAAAAGCTAACGGACTTTGTAGCCATGAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.52
SRP021940_cerebellum 0.25
SRP021940_embryo 0.91
SRP021940_placental_villous 0.4
SRP021940_synovial_membrane 0.63
SRP021940_testis 0.18

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SENINKEVGNIKKNQS---EMKNTILERKISLEGLNSRVDDTEEWMSKLDKRQEEITQAEQIKEKKIQKEGENFQETTDSMRKCNIRIIRIPEGDEKENG
S...........KNQS...EMKNT....K.....LN.RVD..EE..S....R.....Q......K......EN..E......KC..RI..IPEGDEKENG
Retrocopy
SSGVTSQETETLKNQSEILEMKNTMDQIKQNMDSLNARVDAIEEQISITEDRLNGSRQRKR-ETKGLKRNEENLREIANLTSKCKVRISGIPEGDEKENG


Parental protein
TESVLKGIIAENFPDLENETETRVEEAFRSPRYVNVKRTTARHIVVKLAKLNDERILRAARQKKI-TYKGTPLRLSVDFSVETLQAWRDWNDILKTLKDN
TESV.K.I.AENFP.L.NE.E..VEEAFRSP.YVNVKR.TARHIVVKLAK.ND......A...K....KGT..RLS.DFS.ETLQA...WNDI.KT.KDN
Retrocopy
TESVVKEIVAENFPNLGNERERWVEEAFRSPTYVNVKRPTARHIVVKLAKVNDKERILRAARQKK/NNKGTTVRLSEDFSAETLQARGEWNDIFKTSKDN


Parental protein
NLQPRILYPAKISFRYEGEKSFLDKQKLRDFTAMR
NLQPRILYPAKISFRY...K....KQKL.DF.AMR
Retrocopy
NLQPRILYPAKISFRYGEMKPSPKKQKLTDFVAMR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide