RetrogeneDB ID:
retro_ecab_275
Organism:
Horse ( Equus_caballus )
Location:
12:10759956-10760325 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.86 %
Coverage:
86.62 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS23
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S23 [Source:HGNC Symbol;Acc:10410]

Genomic region (view in browser)





>retro_ecab_275
GGCAAGTGTCGTGGTCTTCATACCGTCAGGAAGCTCTGTAGCCCCTGACAGGATCAGAAG
TGGCATGATGAACAGTACAGGAAAACCCATCTGGGCCCAACCCTGAAAGCCAACCCTTTC
AGAGGTGCTTCCCATGCAAAGGGAATTGTGCTAGAAAAAATATGGCTTGAAGCCAAACAT
CCCAATTTTGCCACCCAGAAGCGTGTCAGGGTACAGCTGATCAAGAACGGCAAAAAAATC
ACAGCCTTTGTGCCCAATGATGGTTGCTTGAATTTTATTGAGGAAAACGATGAAGTTCTG
GTTGCTGGACGTGGTCACAAAGGTCACGCTGTTGGTGCCATTCCTGGAGGCCTCTTCAAG
GTTGTCAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVL
GKCRGL.T.RKL.S...DQKWHD.QY.K.HLG..LKANPF.GASHAKGIVLEK...EAK.PN.A..K.VRVQLIKNGKKITAFVPNDGCLNFIEENDEVL
Retrocopy
GKCRGLHTVRKLCSP*QDQKWHDEQYRKTHLGPTLKANPFRGASHAKGIVLEKIWLEAKHPNFATQKRVRVQLIKNGKKITAFVPNDGCLNFIEENDEVL


Parental protein
VAGFGRKGHAVGDIPGVRFKVVK
VAG.G.KGHAVG.IPG..FKVV.
Retrocopy
VAGRGHKGHAVGAIPGGLFKVVR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide