RetrogeneDB ID:
retro_ecab_276
Organism:
Horse ( Equus_caballus )
Location:
12:15388065-15388362 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.02 %
Coverage:
58.24 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS7
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S7 [Source:HGNC Symbol;Acc:10440]

Genomic region (view in browser)





>retro_ecab_276
AATGTTGCCTTTATTGCTCAGAGGAGAATTCTGCTTAAGCCAACTCCAAAGAAGGTTTAC
AAGCAATAAGTCTAAATATTCCAGGATCCACACTCTGACAGCTGTCCATGGTGATATATG
GGAGGAGTTGGCCTTCTCAAGTGAAATTGTGCACAGGAGAATTCACATGAAACTGGATGA
CAGCCCACTCATAAAGATTCGTTTGGATAAAAGCACAGCAGAACAATGTGGAACACAAGG
TTGGAATTTTTCTAGTGTTTATAAGAAGCTCATGGGCAAGGATCTAATTTTGAATTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
HVVFIAQRRILPKPTRKSR-TKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLD-KAQQNNVEHKVE-TFSGVYKKLTGKDV-N
.V.FIAQRRIL.KPT.K...T.NK.K..R..TLTAVH..I.E.L.F.SEIV..RI..KLD.S.LIK..LD.KAQQNNVEHKV...FS.VYKKL.GKD..N
Retrocopy
NVAFIAQRRILLKPTPKKV\TSNKSKYSRIHTLTAVHGDIWEELAFSSEIVHRRIHMKLDDSPLIKIRLD\KAQQNNVEHKVG/NFSSVYKKLMGKDL/N


Parental protein
FEF
FEF
Retrocopy
FEF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide