RetrogeneDB ID:
retro_ecab_278
Organism:
Horse ( Equus_caballus )
Location:
13:16389478-16389901 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
58.22 %
Coverage:
59.24 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_278
AAGAGAGAAAGAAGGATGGAGAGAATATTTGAAGAAATAACAGCTGAAATCTTCCAAAAT
TTGATGAACTATATGAATACAAACATCCAAGAAGCTCAAGAAATTCCAAGTAAGATGAAC
TCAAAGAGACCCACACCAAGACATTATAATCAACTTCTGAAAGACAAAGACAGAGTATCT
TGAAAGCAGCAAGAGAGAAGCAAATCATCACATACAAGGGATCCTCAATAAGATTATCAG
CATATTTCTCATCAGAAACTTTGGAGGCCAGAAGGCAGTGGGCTCATATATTCAAAGTGC
TCAAAGAAGAAAACTGTAAACCAAGAATCCTATATTTTGGCAAAACTCTCCTTCAAAAGT
GAGGGAGAAATTAAGACATTTCCATATACACAAAAGTTGAGGGAGTTTGTTACCACTAGA
CCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.6
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ERDKGTEKLFEEIIAN-FPNLRKGTDIQTQEAQRAPNKINPKRPTPRHIIIKMSVIKDKERFLKATRER-KQNLTSRGSSIRFSADFPSETLEARRQWAG
.R....E..FEEI.A..F.NL........QEAQ..P.K.N.KRPTPRH........KDK.R......ER.KQ..T..GSSIR.SA.F.SETLEARRQWA.
Retrocopy
KRERRMERIFEEITAEIFQNLMNYMNTNIQEAQEIPSKMNSKRPTPRHY---NQLLKDKDRVS*KQQER/KQIITYKGSSIRLSAYFSSETLEARRQWAH


Parental protein
IFKVLKEKNCQPRILR-PAKLPFKSEGDIRTFP--NKLGEFITTRP
IFKVLKE.NC.PRIL...AKL.FKSEG.I.TFP...KL.EF.TTRP
Retrocopy
IFKVLKEENCKPRILY\LAKLSFKSEGEIKTFPYTQKLREFVTTRP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide