RetrogeneDB ID:
retro_ecab_281
Organism:
Horse ( Equus_caballus )
Location:
13:26216920-26217613 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
65.82 %
Coverage:
79.73 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_281
GAACCAATCAGAAATGAATACTGGATGAAGAATGAAGTACTGGAAATGAAAGATTCACTA
GAGGGACTCAATATCAAAATAGATGATATGGAAGAACGGATCAGTGAGCTGGATGAAAGA
CTAGAGGACATCATTCAAGCTGAAAAGATAAAAAAGTTCAAATAAGGAGGACAGTCTAAG
GGACCCCTGGGACAACATCAAGTGCACTAACATCCATATCATAGGTGTCCCAGGAGAAGA
GAGACAAAGGGGCAGAGAATCTATTTGAAGAAATAATTGCTGAAAACTTTCCTAACCTAA
GGAAGGAAACAGACTTCCAAGTACAGGAAACACAAAGAGCACCAAACAAGATAAACTCCA
AAGGCCCACACCAAGACACATAGTAATTAAAATGTCAAAAATTAAAGATAAAGAGGAAAT
CACAAAAGCTGCAAGAGAAGGCCATAAGCTACATACAAAGGAAACCACATAAGGCTATTA
GCCGACCTCTCAGCAGAAACCTTACAGGCTAGAAGGGAGTGGCATGATATATTTAAAGCA
CTGAAAGAAAAAAATGTACAGCCAAGAATACTCTACCCAGCAAAGTTACCATTAGGAATG
GAAGGAGAGATAAAGACATTCCCAGACAAGCAAAAACTAAAGGAGTTTATCACCAAGAAA
CCTGCCTTACAAGACGTGCTAAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 1.78

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ENIKKQSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERLEEVTQAEQIKEKMK-KTDSLRDLWDNIKCTKIRITGVPEEEGDKGAE-IYLIKIAENFP
E.I.....MKN...EMK.SLEGLN...DD.EERIS.LDERLE...QAE.IK.K.K.K.DSLRD.WDNIKCT.I.I.GVP.EE...G.E......IAENFP
Retrocopy
EPIRNEYWMKNEVLEMKDSLEGLNIKIDDMEERISELDERLEDIIQAEKIK-KFK\KEDSLRDPWDNIKCTNIHIIGVPGEERQRGRE\LFEEIIAENFP


Parental protein
KLQKEADFQVQEAQNAPNRINPK-RHTPRHIINKISNPGRNKERILKAARERQQV-TYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLA
.L.KE.DFQVQE.Q.APN.IN.K.R.TPRHI..K.S.....KE.I.KAARE.....TYKGN.IRL.ADLSAETLQARR.WH.IFK.L..K...PRILY.A
Retrocopy
NLRKETDFQVQETQRAPNKINSK/RPTPRHIVIKMSKI-KDKEEITKAAREGHKL/TYKGNHIRLLADLSAETLQARREWHDIFKALKEKNVQPRILYPA


Parental protein
RSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
.....MEGEIK.FPDKQKLKEFITKKPALQ..LKGLI
Retrocopy
KLPLGMEGEIKTFPDKQKLKEFITKKPALQDVLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide