RetrogeneDB ID:
retro_ecab_282
Organism:
Horse ( Equus_caballus )
Location:
13:38480155-38480594 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.97 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS14
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S14 [Source:HGNC Symbol;Acc:10387]

Genomic region (view in browser)





>retro_ecab_282
ATGGCACTGGGCAAGGGATAGGAAAAGAAGGTAGAACAGGTCATCAGCCTCAGATCTCAG
GTGGCTGAAGGAGAAAATGTATTTGGTTTCTGCCATATCTTTGCATCCCTCAATGACACT
TTTGTCTATGTCACTCATCTTTCTGGCAAGGAAACCATCTGCCGTATGACTGGCGGGATG
AAGGTGAAGGATGACCAAGATGAATCCTCACCATACACTGGCATGTTGGCTGCCCAGGAT
GTAGCCCAGAGGTGCAAGGAGCTTGGCATCACTGCCCTCCACATCAAACTCTGGGCCACA
GCAGGAAACAGGCCCAAGGGCCAGTCAGCCCTCAAAGCCCTTCCCCACTCTGGAATGAAG
ATCAGGCGGATTGAGGATGTCACCCCCCATCTCTTCTGATAGCACCCACAGGAAAGGGGG
TCACCGTGGTCGCCATCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.12
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.18
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRAT
MA..KG.EKK.EQVISL..QVAEGENVFG.CHIFAS.NDTFV.VT.LSGKETICR.TGGMKVK.D.DESSPY..MLAAQDVAQRCKELGITALHIKL.AT
Retrocopy
MALGKG*EKKVEQVISLRSQVAEGENVFGFCHIFASLNDTFVYVTHLSGKETICRMTGGMKVKDDQDESSPYTGMLAAQDVAQRCKELGITALHIKLWAT


Parental protein
GGNRTKTPGPGAQSALRALARSGMKIGRIEDVT-PIPSDSTRRKGGRRGRRL
.GNR.K..G..A..AL.....SGMKI.RIEDVT.PI.SDST.RKGG.RGR.L
Retrocopy
AGNRPK--GQSALKAL---PHSGMKIRRIEDVT\PISSDSTHRKGGHRGRHL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide