RetrogeneDB ID:
retro_ecab_288
Organism:
Horse ( Equus_caballus )
Location:
13:19674539-19675297 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
92.19 %
Coverage:
74.19 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
CAB39
Parental gene aliases:
No gene alias available
Parental gene description:
calcium binding protein 39 [Source:HGNC Symbol;Acc:20292]

Genomic region (view in browser)





>retro_ecab_288
TTGAAGGAAATTCCGTATGGTACAAATGAAAAAGAACCACAGACAGAAGCGGCGGCCAAC
TCGCTCAAGAACTCTGTAACAGTGGGCTCCTTAGCACCCTGGTAGCTGACTTACAGCTCA
TTGACTTTGAGGGCAAAAAAAGATGTGGCTCAAATTTTCAACAATATTCTCAGAAGACAA
ATTGGTACAAGAACTCCCACTGTTGAATACATCTGCACCCAACAGAATATTTTGTTCGTG
TTATTGAAAGGGTATGAATCTCCAGAAATAGCTCTAAATTGTGGAATAATGTTGAGAGAA
TGCATCAGACACGAACCACTTGCAAAAATCATTTTTGGTCAGAACAATTTTATGATTTCT
TCAGATGTGTCGAAATGTCAATATTTGACGTAGCTTCAGATGCATTCGCCACATTCAAGG
ATTTACTTACAAGACATAAATTGCTCAGTGCAGAATTTTTGGAACAGCATTATGATAGAT
TCTTCAGTGAACATGAGAAGTTACTTCATTCAGAAAATTAGGTGACAAAAAGACAGTCAC
CCAAGCTTCTCGGTGAGTTACTATTAGACAGACACAACTTCACGATTATGACAAAATCCA
TCAGTAAACCTGAGAACCTCAAATTAATGATGAACCTTCTGCGAGACAAAAGTTGTAACA
TCCAATTTGAGGCCTTTCACATTTTTAAGGTGTTTGTAGCCAATCCTAACAAGACACAGC
CCATCCTCAACATCCTCCTCTAGAACCAGACCAAACTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKEILYGTNEKEPQTEAVA-QLAQELYNSGLLSTLVADLQLIDFEGKK-DVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIML
.KEI.YGTNEKEPQTEA.A.QLAQEL.NSGLLSTLVADLQLIDFEGKK.DVAQIFNNILRRQIGTRTPTVEYICTQQNILF.LLKGYESPEIALNCGIML
Retrocopy
LKEIPYGTNEKEPQTEAAA/QLAQELCNSGLLSTLVADLQLIDFEGKK\DVAQIFNNILRRQIGTRTPTVEYICTQQNILFVLLKGYESPEIALNCGIML


Parental protein
RECIRHEPLAKIIL-WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIM
RECIRHEPLAKII..WSEQFYDFFR.VEMS.FD.ASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSE.EKLLHSEN.VTKRQS.KLLGELLLDRHNFTIM
Retrocopy
RECIRHEPLAKIIF/WSEQFYDFFRCVEMSIFDVASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEHEKLLHSEN*VTKRQSPKLLGELLLDRHNFTIM


Parental protein
TKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQTKL
TK.ISKPENLKLMMNLLRDKS.NIQFEAFH.FKVFVANPNKTQPIL.ILL.NQTKL
Retrocopy
TKSISKPENLKLMMNLLRDKSCNIQFEAFHIFKVFVANPNKTQPILNILL*NQTKL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide