RetrogeneDB ID:
retro_ecab_289
Organism:
Horse ( Equus_caballus )
Location:
13:31392789-31393201 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.14 %
Coverage:
93.2 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL27A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L27a [Source:HGNC Symbol;Acc:10329]

Genomic region (view in browser)





>retro_ecab_289
AGACTGAGGGAGCCCTAGAAACTTCAGGGCCAGGTGAGCCATGGCGACAGCCACATCAGC
AAGCACCAGAAGCACCCAGGTAGCCGGGGCAATGCTGGTAGCAGGCATCACCACAGGAGC
ATCTTAGATAAATGCCACCCAGGTTACTTTGGCGAGGTTAGCATAAGGCGTTACCACTTA
AGGAGGAGTCAGAGCTTCTGCCCAACTGTCAATTTCGATGAATTACGGGCCTTGTTCAGT
GAGAAGACTTGGGTAAATGCTACCAAAAAACATGACTGGAGGTGCCCCCAACATGGATGT
AGTGTAATGGAGCTAGGAAAACGGTCTAGGGAAGAGAAAGCTCCGAAAGCCACCTGTTAT
CATGAAGGTCGATTTCTTCAGCGGAAGAGCCAAGAAGAATAAGGACGGGGTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAA-KNKTGAAPIID
RLR...KL.G.VSHG...I.KH.KHPG.RGNAG..HHHR...DK.HPGYFG.V..R.YHL.R.QSFCPTVN.D.L..L.SE.T.VNA..KN.TG.AP..D
Retrocopy
RLREP*KLQGQVSHGDSHISKHQKHPGSRGNAGSRHHHRSILDKCHPGYFGEVSIRRYHLRRSQSFCPTVNFDELRALFSEKTWVNAT\KNMTGGAPNMD


Parental protein
VVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKGV
VV.......LGK.KL.K.PVI.K..FFS.RA.....GV
Retrocopy
VV*WS*ENGLGKRKLRKPPVIMKVDFFSGRAKKNKDGV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide