RetrogeneDB ID:
retro_ecab_29
Organism:
Horse ( Equus_caballus )
Location:
7:12875287-12876052 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.03 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_29
ATGGCCTCGTTGCTGAAGGTGGATCAGGAAGTGAAGCTCAAGGTTGATTCTTTCAGGGAG
CGGATCGCAAGTGAGGCAGAAGACTTGGTGGCAAATTTTTTCCCAAAGAAGTTGTTAGAA
CTTGATAGTTTTTTGAAGGAACCAATCCTAAACATCCATGACCTAACTCAGATCCACTCA
GACATGAATCTCCCAGTCCCTGACCCCATTCTTCTCACCAATAGCCACGATGGACTGGAC
GGTCCCACTTACAAGAAGCGAAGGTTGGATGAATGTGAAGAGGCCTTCCAAGGAATCAAG
GTGTTTGTGATGCCCAATGGGATGCTTAAAAGCAACCAGCAGCTCGTACACATTATTGAG
AAAGTGAAACCTGGGATTCGGCTGCTGATCAAGAAATGCAACACGGTCAAAATGTGGGTA
CAGCTTCTGATTCCTAGGATAGAAGATGGGAACAACTTTGGGGTGTCCATTCAGGAGGAG
ACAGTTGCAGAACTAAGAACCGTTGAGAGTGAAGCTGCATCTTATCTGGACCAGATTTCT
AGATATTATATTACAAGAGCCAAATTGGTTTCTAAAATAGCTAAATATCCCCATGTGGAG
GACTATCGCCGCACCGTGACAGAGATTGATGAGAAAGAATATATCAGCCTTCGACTCATC
ATATCCGAGCTAAGGAATCAATATGTCACTCTACATGACATGATCCTGAAAAATATCGAG
AAGATCAAACGGCCCCGGAGCAGCAATGCCGAGACACTGTACTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.29
SRP021940_cerebellum 0.2
SRP021940_embryo 0.29
SRP021940_placental_villous 0.4
SRP021940_synovial_membrane 0.57
SRP021940_testis 0.89

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASLLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGTK
MASLLKVDQEVKLKVDSFRERI.SEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQG.K
Retrocopy
MASLLKVDQEVKLKVDSFRERIASEAEDLVANFFPKKLLELDSFLKEPILNIHDLTQIHSDMNLPVPDPILLTNSHDGLDGPTYKKRRLDECEEAFQGIK


Parental protein
VFVMPNGMLKSNQQLVDIIEKVKPEIRLLIEKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVE
VFVMPNGMLKSNQQLV.IIEKVKP.IRLLI.KCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVE
Retrocopy
VFVMPNGMLKSNQQLVHIIEKVKPGIRLLIKKCNTVKMWVQLLIPRIEDGNNFGVSIQEETVAELRTVESEAASYLDQISRYYITRAKLVSKIAKYPHVE


Parental protein
DYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKIKRPRSSNAETLY
DYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKIKRPRSSNAETLY
Retrocopy
DYRRTVTEIDEKEYISLRLIISELRNQYVTLHDMILKNIEKIKRPRSSNAETLY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide