RetrogeneDB ID:
retro_ecab_291
Organism:
Horse ( Equus_caballus )
Location:
14:1979931-1981872 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
97.06 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1
Parental gene:
Parental gene symbol:
HSPA8
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock cognate 71 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:A2Q0Z1]
Genomic region (view in browser)
>retro_ecab_291
ACCATGTCTGAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGT
GTTTTCCAGCATGGAAAAGTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCCA
AGCTATGTCGCTTTTACTGACACGGAACGATTGATCGGTGATGCTGCAAAGAACCAAGTT
GCAACGAACCCGACCAACACGGTTTTTGATGCCAAACGTCTGATTGGACGTAGATTTGAT
GATGCTGTTGTCCAGTCTGATATGAAGCATTGGCCCTTCATGGTGGTGAATGATGCAGGC
AGGCCCAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTG
TCTTCTATGGTTTTGACAAAGATGAAGGAAATCACAGAAGCCTACCTTGGGAAGACTGTT
ACCAATGCTGTTGTCACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAA
GATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCT
GCTATTGCTTACGGTTTAGACAAAAAGGTTGGAGCTGAGAGAAACGTACTGACCTTTGAC
TTAGGAGGTGGCACTTTCGATGTGTCAATCCTCTCTATTGAAGATGGAATCTTTGAGGTC
AAATCTACAGCTGGAGACACCCACTTAAGTGGAGAAGACTTTGACAACTGAATGGTCAAC
CATTTTATCGCAGAATTCAAGCGCAAGCATAAGAAGGACATCAGTGAGAACAAGAGGGCC
GTCCGACGCCTGCGCACTTCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAG
GCCAGTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGT
GCCCGATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAA
GCCCTTCGGGATGCCAAGCTGGACAAGACCCAGATTCATGATATTGTCCTAGTGGGTGGT
TCTACCTGCATCCCCAAGATTCAGAAACTTCTACAGGACTTCTTCAATGGAAAAGAACTG
AATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATC
CTATCTGGAGACAAATCTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCTCTT
TCCCTTGGCATGGAAACTGCTGGTGGAGTCATGACTGTGCTCATAAAGTGCAACACTACG
ATTCCTACCAAGCAGACACAAACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTC
ATTCAGGTTTATGAAGGTGAGCATGCCATGACCAAGGATAACAATCTGCTTGGCAAGTTT
GAACTCACAGGCATACCTCCAGCCCCTCGTGGTGTTCCTCAGATTGAAGTCACTTTTGAT
ATTGATGCCAATGGCATTCTCAATGTCTCTGCTGTGGACAAGAGTACAGGGAAAGAAAAC
AAGATCACCATCACTAACGACAAGGGTCGTTTGAGCAAGGAAGACATAGAGTGCATGGTC
CAGGAAGCTGAGAAGTACAAGGCTAAAGATGAAAAGCAGCAGGACAAGGTGTCTTCTAAG
AATTCACTTGAGTCCTATGCATTCAACATGAAAGCAACTGTTGAAGATGAAAAACTTCAA
GGCAAGATCAATGACGAGGACAAACAGAAGATTCTTGACAAGCGCAATGAAATCATCAAC
TGGCTTGACAAGAACCAGACTGCAGAGAAGGAAGAATTTGAACATCAGCAGAAAGAGCTG
GAGAAAGTTTGCAACTCCATCATTACCAAGCTGTACCAGAGTGCAGGAAGCATGCCAGGA
GGAATGCCTGGGGGTTTCCCTGGTGGTGGAGCTCCTCCATCTGGTGGTGCCTCCTCTGGA
CCCACCATTGAAGAGGTGGAT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.3 |
| SRP021940_embryo | 0.31 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.31 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
