RetrogeneDB ID:
retro_ecab_291
Organism:
Horse ( Equus_caballus )
Location:
14:1979931-1981872 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.06 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
HSPA8
Parental gene aliases:
No gene alias available
Parental gene description:
Heat shock cognate 71 kDa protein [Source:UniProtKB/Swiss-Prot;Acc:A2Q0Z1]

Genomic region (view in browser)





>retro_ecab_291
ACCATGTCTGAGGGACCTGCAGTTGGCATTGATCTTGGCACCACCTACTCGTGTGTGGGT
GTTTTCCAGCATGGAAAAGTGGAAATAATAGCCAATGATCAAGGAAACCGAACCACCCCA
AGCTATGTCGCTTTTACTGACACGGAACGATTGATCGGTGATGCTGCAAAGAACCAAGTT
GCAACGAACCCGACCAACACGGTTTTTGATGCCAAACGTCTGATTGGACGTAGATTTGAT
GATGCTGTTGTCCAGTCTGATATGAAGCATTGGCCCTTCATGGTGGTGAATGATGCAGGC
AGGCCCAAGGTCCAAGTAGAATACAAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTG
TCTTCTATGGTTTTGACAAAGATGAAGGAAATCACAGAAGCCTACCTTGGGAAGACTGTT
ACCAATGCTGTTGTCACAGTACCTGCTTACTTTAATGACTCTCAGCGTCAGGCTACCAAA
GATGCTGGAACTATTGCTGGTCTCAATGTACTTAGAATCATCAATGAGCCAACTGCTGCT
GCTATTGCTTACGGTTTAGACAAAAAGGTTGGAGCTGAGAGAAACGTACTGACCTTTGAC
TTAGGAGGTGGCACTTTCGATGTGTCAATCCTCTCTATTGAAGATGGAATCTTTGAGGTC
AAATCTACAGCTGGAGACACCCACTTAAGTGGAGAAGACTTTGACAACTGAATGGTCAAC
CATTTTATCGCAGAATTCAAGCGCAAGCATAAGAAGGACATCAGTGAGAACAAGAGGGCC
GTCCGACGCCTGCGCACTTCTTGTGAACGTGCTAAGCGTACTCTCTCTTCTAGCACCCAG
GCCAGTATTGAGATTGATTCACTCTATGAAGGAATCGACTTCTATACCTCTATTACCCGT
GCCCGATTTGAAGAATTGAATGCTGACCTGTTCCGTGGCACCCTGGACCCTGTAGAGAAA
GCCCTTCGGGATGCCAAGCTGGACAAGACCCAGATTCATGATATTGTCCTAGTGGGTGGT
TCTACCTGCATCCCCAAGATTCAGAAACTTCTACAGGACTTCTTCAATGGAAAAGAACTG
AATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATC
CTATCTGGAGACAAATCTGAAAATGTTCAAGATTTGCTGCTGTTGGATGTCACTCCTCTT
TCCCTTGGCATGGAAACTGCTGGTGGAGTCATGACTGTGCTCATAAAGTGCAACACTACG
ATTCCTACCAAGCAGACACAAACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTC
ATTCAGGTTTATGAAGGTGAGCATGCCATGACCAAGGATAACAATCTGCTTGGCAAGTTT
GAACTCACAGGCATACCTCCAGCCCCTCGTGGTGTTCCTCAGATTGAAGTCACTTTTGAT
ATTGATGCCAATGGCATTCTCAATGTCTCTGCTGTGGACAAGAGTACAGGGAAAGAAAAC
AAGATCACCATCACTAACGACAAGGGTCGTTTGAGCAAGGAAGACATAGAGTGCATGGTC
CAGGAAGCTGAGAAGTACAAGGCTAAAGATGAAAAGCAGCAGGACAAGGTGTCTTCTAAG
AATTCACTTGAGTCCTATGCATTCAACATGAAAGCAACTGTTGAAGATGAAAAACTTCAA
GGCAAGATCAATGACGAGGACAAACAGAAGATTCTTGACAAGCGCAATGAAATCATCAAC
TGGCTTGACAAGAACCAGACTGCAGAGAAGGAAGAATTTGAACATCAGCAGAAAGAGCTG
GAGAAAGTTTGCAACTCCATCATTACCAAGCTGTACCAGAGTGCAGGAAGCATGCCAGGA
GGAATGCCTGGGGGTTTCCCTGGTGGTGGAGCTCCTCCATCTGGTGGTGCCTCCTCTGGA
CCCACCATTGAAGAGGTGGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.3
SRP021940_embryo 0.31
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.31
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TMSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAG
TMS.GPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA.NPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAG
Retrocopy
TMSEGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVATNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAG


Parental protein
RPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFD
RPKVQVEYKGETKSFYPEEVSSMVLTKMKEI.EAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVL.FD
Retrocopy
RPKVQVEYKGETKSFYPEEVSSMVLTKMKEITEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLTFD


Parental protein
LGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITR
LGGGTFDVSIL.IEDGIFEVKSTAGDTHL.GEDFDN.MVNHFIAEFKRKHKKDISENKRAVRRLRT.CERAKRTLSSSTQASIEIDSLYEGIDFYTSITR
Retrocopy
LGGGTFDVSILSIEDGIFEVKSTAGDTHLSGEDFDN*MVNHFIAEFKRKHKKDISENKRAVRRLRTSCERAKRTLSSSTQASIEIDSLYEGIDFYTSITR


Parental protein
ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL
ARFEELNADLFRGTLDPVEKALRDAKLDK.QIHDIVLVGGST.IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL
Retrocopy
ARFEELNADLFRGTLDPVEKALRDAKLDKTQIHDIVLVGGSTCIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL


Parental protein
SLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN
SLG.ETAGGVMTVLIK.NTTIPTKQTQTFTTYSDNQPGVLIQVYEGE.AMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN
Retrocopy
SLGMETAGGVMTVLIKCNTTIPTKQTQTFTTYSDNQPGVLIQVYEGEHAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKEN


Parental protein
KITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKEL
KITITNDKGRLSKEDIE.MVQEAEKYKA.DEKQ.DKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDK.NEIINWLDKNQTAEKEEFEHQQKEL
Retrocopy
KITITNDKGRLSKEDIECMVQEAEKYKAKDEKQQDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILDKRNEIINWLDKNQTAEKEEFEHQQKEL


Parental protein
EKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD
EKVCN.IITKLYQSAG.MPGGMPGGFPGGGAPPSGGASSGPTIEEVD
Retrocopy
EKVCNSIITKLYQSAGSMPGGMPGGFPGGGAPPSGGASSGPTIEEVD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide