RetrogeneDB ID:
retro_ecab_293
Organism:
Horse ( Equus_caballus )
Location:
14:23365029-23365227 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.82 %
Coverage:
77.65 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
UFM1
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-fold modifier 1 [Source:HGNC Symbol;Acc:20597]

Genomic region (view in browser)





>retro_ecab_293
ATGTGGAAGGTTTCCTTTAAGATCACTCTGACGTTGGATCTGCCGCTCCCTTACAAAGTA
CTCCGTGTTCCCAAACGTAGCCCTTTCACAACAGTCTTAAAGTTTGCAGCAGAAGAATTT
AAAGTTCCTGCAGCAACAAGCACAATTATTACCAATGATGGAATGGGAATAAATCCTGTG
CAGACTGCCGGAAATGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKVSFKITLTSDPRLPYKVLSVPEGTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNV
M.KVSFKITLT.D..LPYKVL.VP...PFT.VLKFAAEEFKVPAATS.IITNDG.GINP.QTAGNV
Retrocopy
MWKVSFKITLTLDLPLPYKVLRVPKRSPFTTVLKFAAEEFKVPAATSTIITNDGMGINPVQTAGNV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide