RetrogeneDB ID:
retro_ecab_295
Organism:
Horse ( Equus_caballus )
Location:
14:26305664-26305870 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
74.29 %
Coverage:
93.24 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
COA5
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome c oxidase assembly factor 5 [Source:HGNC Symbol;Acc:33848]

Genomic region (view in browser)





>retro_ecab_295
GAAGACAAGCCCGAGGGCAGGGCATGCATGGGCATGAAAGAGGACGTGGGCGCACGTGTG
CCTCGGTCAGACTTTGTGCTCCAGGAGAGAAAATACTTTCAGCAGTCTTTGAAGGAAGAA
ACTGCAAAGCTTTGAAATATTCATTTTTTGAATGTCAAAGATCAAGGTTGGACGCCAGAT
CAAGATTCAGAGGAAGAAAAGGATAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EDKPEGGACAGVKEDLGACLLRSDCVLKEGKSPRQCLKEG-NCKALKYSFFECKRSMLDARSRFRGRKGY
EDKPEG.AC.G.KED.GA...RSD.VL.E.K...Q.LKE..NCKALKYSFFEC.RS.LDARSRFRGRKGY
Retrocopy
EDKPEGRACMGMKEDVGARVPRSDFVLQERKYFQQSLKEE/NCKALKYSFFECQRSRLDARSRFRGRKGY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide