RetrogeneDB ID:
retro_ecab_296
Organism:
Horse ( Equus_caballus )
Location:
14:44569143-44569729 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.42 %
Coverage:
98.49 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_296
AAGAAATCTAGAATGATTCAGGTGGAAGAGTAGAGAGAACTAAGATTTTTAAAAAATGAA
GACATTCTATGAGAAATATGTGAATCAATTAGGAAAATCAGCATAAGGATAATAGGTATC
CCAGAAGGAGAAGAGAGGGAGAAAGGAACAGAGAGCTTATTTAAAGAAATAATAGCTGAT
AACTTCCCAAACCTGGGGAAGAAACTGGATATACAAGAACATGAAGCTAATAGAACTCCT
AAATATCTTAACACAAAAAGACCTTCTCCAAGGCACATTATATTAAAACAGCCAAAAGTC
AATGACAAAGACAGAATGTTAAGGACAGCCAGAGAGAAGAAAATAACTTATAAAGGAAAT
CTCATCAGGCTATCAGTGGATTTCTCAGCAGAAACTACAGACTAGAAGAGAGTGGAGTGA
TATAGTCAAAATATTGAAAGATAATAACTATCAGCAAAGAATACTCTATCCAACAAAATT
ATTCTTCAGATATGTAGGAGAAATAAAGGGTCTCCCAGGAAAATAAAAGCTGAAGGAGTT
CACCACCACAAGACCAGCCTTACAAGAAATGTTGAAAGAAGCTCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RNTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKLAKL
....M...EE.RELR....EDI..EI...IRK..IRII.IP.GEER....ESLFKEII..NF.NLGK.L.IQ..EANRTP.Y.N..RPSPRHI..K..K.
Retrocopy
KKSRMIQVEE*RELRFLKNEDIL*EICESIRKISIRIIGIPEGEEREKGTESLFKEIIADNFPNLGKKLDIQEHEANRTPKYLNTKRPSPRHIILKQPKV


Parental protein
VMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTAL
..K...M...AR.KKITYKG..IRLS.DFS.Q..QTRREW.DI.KILK..NY..RILYP.KL.FRY..EIK....K.KL.EF.TTRP.LQEM.K.AL
Retrocopy
NDKDR-MLRTAREKKITYKGNLIRLSVDFS\QKLQTRREWSDIVKILKDNNYQQRILYPTKLFFRYVGEIKGLPGK*KLKEFTTTRPALQEMLKEAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide