RetrogeneDB ID:
retro_ecab_298
Organism:
Horse ( Equus_caballus )
Location:
14:62251600-62252432 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
58.6 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_298
ATGAGGAGACAAAGTAATATGTTCCAAATAAGGTAACAGGACAAATCCTCAGAAAAAGAA
CTATATGATACAGAGATAAACCATCTACCTGATAAGGAGTGTAAACTAATAGTGAGAAGG
ATGCTCACGGACCTTGGGAGAAGAATAGATGACTACAGTGAGAACATCAATAAAGAAGTG
GAAAATATAAAAAAAGAAGCAATCAGAAATGAAGAATACAATACTGGAAATGAAAATTCA
CTAGAAGGAATCAATAGCACAGTAGATGATACACAAGAAAGGATCAGCAAGCTGGACAAA
AGACTAAAGGAAGTCACCCAAGCTCAACAGATAAAAGAAAAGAGAATTAACAAGAACGGG
GACAGTCTAAGGGACCTCTGGGACAACATCAAGTGCACTAACATCCATATCATAGATGTC
CAACAAAGAGAAGAGAGAGGCAAAGGAGAAGAGAATCTATTTGAAGAAATAATAGCTGAC
AAATTTCCTAACCAAAGGAAAGAAACAGACAGGTACAGGAAGCACAGAGAGGAGCAAACA
AGATGAACCCAAAGATGCCCACACCAAGACACATTATAACTAAAATGTCAAGAACTAAAG
ACAGAGAAAATCCTAAAAGCTGCAAGAGAAAGGCAAGAAGTTACATACAAAGGAAACCTC
ATAAGGCTGTCAGCTGACTTCTCACAAGAACGTTACAGGCTAGGAGTGGTATGATAGATT
TAAAGTGCTGAAAGGAAAAAACCTACAGCCAAGAATACTCTATCTGACAAGGTTATCATT
CAGAATGGAAGGAGAGATAAGGAGTTTTGCAGACAAGCAAAAACTAGAAGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKKS-QSEMKSTILKMK-NSLEGLNSRVDDTEEWIKKL
MRRQ.NMF..R.QDK..EKEL..T....LPDKE.K....RML.DLGRR.D..SEN.NKE.ENIKK..QSEMK.TIL.MK.NSLEG.NS.VDDT.E.I.KL
Retrocopy
MRRQSNMFQIR*QDKSSEKELYDTEINHLPDKECKLIVRRMLTDLGRRIDDYSENINKEVENIKKE\QSEMKNTILEMK/NSLEGINSTVDDTQERISKL


Parental protein
DEKLEEISQVNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMS
D..L.E..Q..Q.KEK.I.KN......LWDNIK..NI.II.V...EER.KGEENLFEEII...FPN.RKETD.................P.......K..
Retrocopy
DKRLKEVTQAQQIKEKRINKNGDSLRDLWDNIKCTNIHIIDVQQREERGKGEENLFEEIIADKFPNQRKETD-RYRKHREEQTR*TQRCPHQDTL*LKCQ


Parental protein
KIKDKERILKAARERPEVTYKGKPIRLSADFSAE-TLQATREWHDIFKVLKGK-NLQPRIFYPSRSSFRMEGEIKRFPDKQNVKE
..K..E.ILKAARER.EVTYKG..IRLSADFS.E.TLQA.....D..K..K.K.NLQPRI.Y..R.SFRMEGEI..F.DKQ...E
Retrocopy
ELK-TEKILKAARERQEVTYKGNLIRLSADFSQE/TLQARSGMIDL-KC*KEK/NLQPRILYLTRLSFRMEGEIRSFADKQKLEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide