RetrogeneDB ID:
retro_ecab_3
Organism:
Horse ( Equus_caballus )
Location:
X:34719543-34720167 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.93 %
Coverage:
97.07 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PPP1R2
Parental gene aliases:
No gene alias available
Parental gene description:
protein phosphatase 1, regulatory (inhibitor) subunit 2 [Source:HGNC Symbol;Acc:9288]

Genomic region (view in browser)





>retro_ecab_3
ATGGCGGCCTCCACCACCTCGCAGCACCGGCCCATCAAGGGGATCCTGAAGAACAAAGGC
TCCACGGCTTCCTCGATGGCGGCCTCCACCCAGCAGTCCGGAGGGGCTACCCAGGAGGTG
CAGAGAAAAAAGTCCCAGAAGTGGGACGAATCGAACATCCTGGCGACATACCGCCCAGCA
TACAGAGATCATGAATTAATGAAGACAAATGAGCCCAGTAGTCCGCACCTCAGTGTGCAA
GATGATGGGGAAGATGCAATGAGTGATTTAGAAGCAAAAGAAGTCATGACCCTAGACATC
TTAGCCTTGAAATTAGCTGTCACTGATATGTCGGAGTCCAACTATCAGGTCGTGGAGCCA
GAGAGCCACGGGGCGCACACCAGCAAAATCTTCGTCGACATTCAAGAAAAACATCAGCAG
TTCGAAATGAAAAGAAAGCTTCACTACAACGAGGGGCTGAACATCAAATTAGCTAGACAA
TTAATTTCGAAAGAGCTACAACTGGAAGAAGAGGATAAAAACGAAGAAAGTCTACATGCT
ACTAACGAAGAGAAGACTACTACAGAAGAATCGGATGAAGGACCTGACGGTGATCAACTG
CAAACCCAGGGCCGCTATGCGTAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 36.08

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAASTAS-HRPIKGILKNKSSTTSSGWPRAEQAGRSVDEELSKKSQKWDEMNILATYHPADKDYGLMKIDEPSTPYHSMVGDDEDALSDSETTEALTPDI
MAAST.S.HRPIKGILKNK.ST.SS......Q.G....E...KKSQKWDE.NILATY.PA..D..LMK..EPS.P..S...D.EDA.SD.E..E..T.DI
Retrocopy
MAASTTSQHRPIKGILKNKGSTASSMAASTQQSGGATQEVQRKKSQKWDESNILATYRPAYRDHELMKTNEPSSPHLSVQDDGEDAMSDLEAKEVMTLDI


Parental protein
LAKKLAAAEGSEPKCRLHEQESSGDEDSDLSPEEQEKKRQFEMKRKLHYNEGLNIKLARQLISKDLHEDEED--EEMSETATGESVNMEASNEGSTTSDQ
LA.KLA....SE......E.ES.G...S......QEK..QFEMKRKLHYNEGLNIKLARQLISK.L...EED..EE.......E....E.S.EG....DQ
Retrocopy
LALKLAVTDMSESNYQVVEPESHGAHTSKIFVDIQEKHQQFEMKRKLHYNEGLNIKLARQLISKELQLEEEDKNEESLHATNEEKTTTEESDEG-PDGDQ


Parental protein
LQ
LQ
Retrocopy
LQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide