RetrogeneDB ID:
retro_ecab_30
Organism:
Horse ( Equus_caballus )
Location:
9:74665044-74665536 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_30
ATGCGTATCGAGAAGTGTTATTTCTGTTCGGGGCCCATCTACCCCGGCCACGGCATGATG
TTCATCCGCAACGATTGCAAGGTGTTCAGATTCTGTAAATCCAAGTGTCATAAAAACTTT
AAAAAGAAGCGCAACCCTCGCAAGGTCAGGTGGACCAAAGCGTTCCGGAAAGCGGCTGGT
AAAGAGCTTACCGTGGATAATTCATTTGAATTTGAAAAACGTAGAAATGAACCCGTCAAA
TACCAGCGAGAGCTATGGAATAAAACTATTGATGCAATGAAGAGAGTTGAAGAGATCAAA
CAGAAACGCCAAGCTAAATTTATAATGAACAGGTTGAAGAAGAATAAAGAACTACAGAAA
GTTCAGGACATCAAAGAAGTCAAGCAAAACATCCATCTCATCCGGGCCCCTCTTGCAGGC
AAAGGAAAGCAGCTGGAAGAAAAAATGGTACAGAAGTTACAAGAGGATGTGGACATGGAA
GATGTTTCATAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 3.89
SRP021940_cerebellum 1.64
SRP021940_embryo 2.47
SRP021940_placental_villous 1.7
SRP021940_synovial_membrane 1.85
SRP021940_testis 0.83

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEV
VFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEV
Retrocopy
VFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRLKKNKELQKVQDIKEV


Parental protein
KQNIHLIRAPLAGKGKQLEEKMVQKLQ
KQNIHLIRAPLAGKGKQLEEKMVQKLQ
Retrocopy
KQNIHLIRAPLAGKGKQLEEKMVQKLQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide