RetrogeneDB ID:
retro_ecab_300
Organism:
Horse ( Equus_caballus )
Location:
14:72288773-72289505 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
95.49 %
Coverage:
99.59 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
EIF4E2
Parental gene aliases:
No gene alias available
Parental gene description:
eukaryotic translation initiation factor 4E family member 2 [Source:HGNC Symbol;Acc:3293]

Genomic region (view in browser)





>retro_ecab_300
ATGAACAACAAGTTCGACGCATTGAAAGATGATGACAGTGGGGACCATGATCAGAATGAA
GAAAACAGCACACAGAAAGATGGTGAGAAGGAAAAAACAGAATGAGACAAGAGTCAGGGC
AGCAGCAAGAGGAAGGCTGTTGTCCCAGGACCAGCAGAGCATCCCCTGCAGTACAACTGC
ACTTTCTGGTACTCCAGGAGAACCCCCGGCCGGCCTACCAGCTCACAGAGCTACGAACAG
AACATCAAACAGATCGGCACCTTTGCCTCTGTGGAGCAGTTCTGGAGGTTTTACAGCCAC
ATGGTACGTCCCGGGGACCTGACGGGCCACAGTGACTTCCATCTCTTCAAAGAAGGAATT
AAACCCATGTGGGAGGATGATGCAAATAAAAATCGTGGCAAGTGGATTATTCGGCTGCGA
AAGGGCTTGGCAACCCGTTGCTGGGAGAATCTCATCCTGGCCATGTTGGGGGAGCAGTTC
ATGGTTGGGGAGGAGATCTGTGGGGCTGTGGTCTCTGTCCAGTTCCAGGAGGACATTATT
TCAATATGGAATAAGACTGCCAGTGACCAAGCAACCATAGCCCTAATCCGGGATACACTT
TGGCGAGTGCTTAATCTACCTCCCAACACCATTATGGAATACAAAACCCACACCGACAGC
AACAAAATGCCAGGCAGCCTGGGCCCCCAAAGGCTCCTTTTTCAAAACCTCTGGAAGCCG
CGGTTGAATGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKAERDKSQGSSKRKAVVPGPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSH
MNNKFDALKDDDSGDHDQNEENSTQKDGEKEK.E.DKSQGSSKRKAVVPGPAEHPLQYN.TFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSH
Retrocopy
MNNKFDALKDDDSGDHDQNEENSTQKDGEKEKTE*DKSQGSSKRKAVVPGPAEHPLQYNCTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWRFYSH


Parental protein
MVRPGDLTGHSDFHLFKEGIKPMWEDDANKNGGKWIIRLRKGLASRCWENLILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTL
MVRPGDLTGHSDFHLFKEGIKPMWEDDANKN.GKWIIRLRKGLA.RCWENLILAMLGEQFMVGEEICGAVVSV.FQEDIISIWNKTASDQAT.A.IRDTL
Retrocopy
MVRPGDLTGHSDFHLFKEGIKPMWEDDANKNRGKWIIRLRKGLATRCWENLILAMLGEQFMVGEEICGAVVSVQFQEDIISIWNKTASDQATIALIRDTL


Parental protein
RRVLNLPPNTIMEYKTHTDSIKMPGRLGPQRLLFQNLWKPRLNV
.RVLNLPPNTIMEYKTHTDS.KMPG.LGPQRLLFQNLWKPRLNV
Retrocopy
WRVLNLPPNTIMEYKTHTDSNKMPGSLGPQRLLFQNLWKPRLNV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide