RetrogeneDB ID:
retro_ecab_301
Organism:
Horse ( Equus_caballus )
Location:
14:74607675-74608332 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.56 %
Coverage:
60.83 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_301
GACGTCTCTGCCATTGAGAAAGAGATGGCGCAGCTGGCCAAGGAGCTGAGGCAGAAGAGG
ATGACGCTTGGGTACTCGCAGGCCGACGTTGGGTTCGCCGTGGGGGCCTCTTTTTGGAAA
GGTCCTTAGCCAGACGACCATCTGCCGCTTCGAGGCCCAGCATCTCAGCCTCGCCAACAT
GTAGAAGCTGCTACCGCTGCTGAAAATGTGGCTGGAGGAAGTGGACACCGAGAACCTTCT
GGGCTTATGCAACATGGAGACAATCCTGCAGCAGGCTCGGAAGCGGAGACGGGCAAGCAG
GGAGACTCGCATCGGAAACTCCCTGGAGAGAGTCTTCCTGCAATGCCCAAGGCCCACACC
GCAGCAAATCAGCAGCATCGCTGGGCAGCTCCGGCTGCAGAAGGACCTAGTCCGAGTTTG
GTTCTATAACCGGAGCAAGATGGGCAGCCAGCCAACCAATGATTTCTCCCCACCAGAGGA
GGTGGGGGCAGCTGGCTCTCCTTTCCCAGGGGGACCAGTGTGCTTTCCCCTCGCATTGGG
GCTCCATTTTGGTTCCCTCCACTGTGGGGGCCCATACTTTACACCCTTGTACTCCTCCAC
CCCGTCCCCTGCGGGGGTGCCCTCCTCTCTGCCCCGACCACCACTCTAGACCTCCCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.03
SRP021940_testis 37.68

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DIKALQKDLEQFAKLLKQKRITLGYTQADVGLTLGV-LFGKVFSQTTICRFEALQLSFKNMCKLRPLLQKWVEEADNNENLQEICKAENLV-QARKRKRT
D..A..K...Q.AK.L.QKR.TLGY.QADVG...G..LFGKV.SQTTICRFEA..LS..NM.KL.PLL..W.EE.D..ENL...C..E....QARKR.R.
Retrocopy
DVSAIEKEMAQLAKELRQKRMTLGYSQADVGFAVGA\LFGKVLSQTTICRFEAQHLSLANM*KLLPLLKMWLEEVD-TENLLGLCNMETILQQARKRRRA


Parental protein
SIETRVRGNLENMFLQCPKPTLQQISHIAQQLGLEKDVVRVWFCNRRQKGKRSSSDYSQREDFEAAGSPFSGGPVSFPLAPGPHFGTPGYGGPHFTTLYS
S.ETR....LE..FLQCP.PT.QQIS.IA.QL.L.KD.VRVWF.NR...G.....D.S..E...AAGSPF.GGPV.FPLA.G.HFG....GGP.FT.LYS
Retrocopy
SRETRIGNSLERVFLQCPRPTPQQISSIAGQLRLQKDLVRVWFYNRSKMGSQPTNDFSPPEEVGAAGSPFPGGPVCFPLALGLHFGSLHCGGPYFTPLYS


Parental protein
SVPFPE-GEAFPSVSVTTLGSP
S.P.P..G.A..S...TTL..P
Retrocopy
STPSPA/GGALLSAPTTTLDLP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide