RetrogeneDB ID:
retro_ecab_302
Organism:
Horse ( Equus_caballus )
Location:
14:90992749-90992962 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.46 %
Coverage:
59.2 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
PAM16
Parental gene aliases:
No gene alias available
Parental gene description:
presequence translocase-associated motor 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:29679]

Genomic region (view in browser)





>retro_ecab_302
GCCTCAGTTTCCTTATCTGTAAAGCAAGGGGTTATCAACGTCTCCAAGCTCAGCCCCAAG
GAGGGGAGCTACAAACATTTATTTGAGGTGAGTGATGAATCCGTGGGTGGCTTCTACGTG
CAGACAAATGTGGTTCGAGTGAAGGAGCGGCCCGATGAGGAACTCAGAATCCAGGCCCGA
GAGGACAGAAACAAAGGGCAGATGCCGGAAACA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SGLSLQEAQQILNVSKLSPEEIQKNYEHLFKVNDKSVGGSFYLQSKVVRAKERLDEELRIQAQEDREREQTPPT
...SL...Q...NVSKLSP.E....Y.HLF.V.D.SVGG.FY.Q..VVR.KER.DEELRIQA.EDR...Q.P.T
Retrocopy
ASVSLSVKQGVINVSKLSPKE--GSYKHLFEVSDESVGG-FYVQTNVVRVKERPDEELRIQAREDRNKGQMPET


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide