RetrogeneDB ID:
retro_ecab_303
Organism:
Horse ( Equus_caballus )
Location:
14:92709751-92710492 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
81.38 %
Coverage:
94.51 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
TAF9B
Parental gene aliases:
No gene alias available
Parental gene description:
TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa [Source:HGNC Symbol;Acc:17306]
Genomic region (view in browser)
>retro_ecab_303
ATGGAGTCTGGCAAGATGGCTTCTCCCAAGAGCATGCCGAAAGATGCACAGATGATGGCA
CAGATCCTGAAGGATATGGGCATTACAGAGTACGAGCCAAGAGTTATAAATCAGATGTTG
GAGTTTGCCTTCCGATATGTGACCACAATTCTAGATGATGCAAAAATTTATTCAAGCCAT
GCTAAGAAAGCTACTGTTGATGCCGATGATGTGCGATTGGCAATCCAGTGTCGTGCTGAC
CAGTCTTTTACCTCTCCTCCCCCAAGAGATTTTTTATTGGATATTGCACGGCAAAGAAAT
CAAACCCCTTTGCCATTGATCAAGCCCTATTCGGGCCCTAGGTTGCCACCTGATAGATAT
TGTTTGACTGCTCCAAATTATAGACTTAAGTCTTTACAGAAAAAGGCATCTACTTCTGCG
GGAAGAATAACAGTTCCGCGGTTAAGTGTTGGTTCAGTTACTAGCAGACCAAGTACTCCC
ACTCTTGGCACACCAACCCCACAGACCGTGTCTGTTTCAACCAAGGTAGGGACTCCAGTA
TCCCTCACAGGGCAGAGGTTTACGGTGCAGATGCCCACCTCGCAGTCCCCAGCTGTAAAA
GCGTCCATTCCTGCAACATCAGCAGTTCAGAATGTTCTGATTAATCCGTCATTAATCGGG
TCCAAAAACATTCTTATTACCACTAACATGGTGTCATCACAGAATACTGCCAGTGAATCA
TCAAATACATCGAAAAGAAAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 9.23 |
| SRP021940_cerebellum | 24.74 |
| SRP021940_embryo | 29.99 |
| SRP021940_placental_villous | 18.29 |
| SRP021940_synovial_membrane | 12.87 |
| SRP021940_testis | 181.03 |
Parental protein coverage
Changes in the retrocopy sequence
