RetrogeneDB ID:
retro_ecab_304
Organism:
Horse ( Equus_caballus )
Location:
14:990796-991036 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.75 %
Coverage:
52.98 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS13
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S13 [Source:HGNC Symbol;Acc:10386]

Genomic region (view in browser)





>retro_ecab_304
ATGGGTCACATGCATGCTCCTGGGAAGGGCTTGTCCCAGTAGGCTCTGTCCTTCTGCCAC
AGCATCCCCACCTGGCTTCAGTTGATGTCTGATGACACAAAAGGGTAGATCTACAAACTG
GCCAGTAAATGCCTGACTCCCTCACAAATTGATATGGTCCTGAGAAACTCACATGGCACT
GAACAAGTATGTTTTGTGACAGACAAAAAAATCTTGAGAATTGTTAAGTACAAAGGACTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGL
MG.MHAPGKGLSQ.AL....S.PTWL.L.SDD.K..IYKLA.K.LTPSQI...LR.SHG..QV.FVT..KILRI.K.KGL
Retrocopy
MGHMHAPGKGLSQ*ALSFCHSIPTWLQLMSDDTKG*IYKLASKCLTPSQIDMVLRNSHGTEQVCFVTDKKILRIVKYKGL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide