RetrogeneDB ID:
retro_ecab_305
Organism:
Horse ( Equus_caballus )
Location:
14:1085820-1086820 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
83.28 %
Coverage:
79.52 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
PPP2R2A
Parental gene aliases:
No gene alias available
Parental gene description:
protein phosphatase 2, regulatory subunit B, alpha [Source:HGNC Symbol;Acc:9304]

Genomic region (view in browser)





>retro_ecab_305
ACCAATGATAAAACAATCAAAGTATGGAAAATCAGTGAAAGGGACAAAAGACCAGAAGTG
CGTAAGTTGAAAGAGGAAGGCAGAAGATAGAGACCCTACCACAGTCACTGTACTATGAAC
GCCAGTCTTGAGGCCCATGGATCTAATGGCTGAGGCCAGTGCATGAATAATACTTGCCAA
TGCTCACACATATCACATCAACTCAACTTCTATTAATAGTGATTACGAAATCTATTTATC
TGCAGGTGATTTGCGGATTAATTTTTGGCATCTGGAAATTACAGGCAGGAGTTCTAATGT
TGTGGACATGGAGCCTGCCAATATGGAAGAGCTAAGAGAGGTGACTGCAGCAGCAGAATT
CCACGCAAACAGCCGTAACACATCAGTACACAGCAGCAGTGAAGGAACTATTCGGTTATG
TGACATGAGGGCATCTGCCCTCTGTGACAGGCACTCTAAACTGTTTGAAGAACCTGAAGA
TCCCAGTAACAGGTCTTTTTTTCCTGAAATCATCTCCTCTATTTCTGATGTAAAATTCAG
CCATTGTGGTCAATATGTGATGACTAGAGACTATTTCTCAGTCAAAACTTGGGACTTAAA
TATGGAAAACAGGCCTTTGGGAACATACAAGGTGCATGAATACGTCAGAAGTAAACTTTG
TTCACTGTATGAAAATGACTGCATATTTGACAAATCCGAATGTTGTTGGAATGGATCTGA
CAGTGTTGTCATGACTGGATCTTGCAATAATTTTGTCAGAATGTTTGACAGGAACACAAA
GCGAGACATAACCCTAGAAGCATCACGGAAAAACAACAAACCCCGCATGGTTCTGAAGCC
ACACAAAGTCTGTGCAAGTGGCAACGGAAAGAAGGATGAAATAAGTGTCGACAGCCTAGA
CTTCAGCAAGAAAATACTTCATACGGCCTGGCAGCCCAAGGAAAATATCACTGCTGTAGC
TACTACAAACGATCTGGATATATTTCAAGACAAGGTGAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TNDKTIKLWKISERDKRPEGYNLKEEDGRY-RDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSF
TNDKTIK.WKISERDKRPE...LKEE.GR..RDPTTVT.L..PV.RPMDLM.EAS...I.ANAHTYHINS.SINSDYE.YLSA.DLRIN.WHLEIT.RS.
Retrocopy
TNDKTIKVWKISERDKRPEVRKLKEE-GRR\RDPTTVTVL*TPVLRPMDLMAEASA*IILANAHTYHINSTSINSDYEIYLSAGDLRINFWHLEITGRSS


Parental protein
NIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKIWD
N.VD..PANMEEL.EV..AAEFH.NS.NT.V.SSS.GTIRLCDMRASALCDRHSKLFEEPEDPSNRSFF.EIISSISDVKFSH.G.Y.MTRDY.SVK.WD
Retrocopy
NVVDMEPANMEELREVTAAAEFHANSRNTSVHSSSEGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFPEIISSISDVKFSHCGQYVMTRDYFSVKTWD


Parental protein
LNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDS
LNMENRP..TY.VHEY.RSKLCSLYENDCIFDK.ECCWNGSDSVVMTGS.NNF.RMFDRNTKRDITLEASR.NNKPR.VLKP.KVCASG..KKDEISVDS
Retrocopy
LNMENRPLGTYKVHEYVRSKLCSLYENDCIFDKSECCWNGSDSVVMTGSCNNFVRMFDRNTKRDITLEASRKNNKPRMVLKPHKVCASGNGKKDEISVDS


Parental protein
LDFNKKILHTAWHPKENIIAVATTNNLYIFQDKVN
LDF.KKILHTAW.PKENI.AVATTN.L.IFQDKVN
Retrocopy
LDFSKKILHTAWQPKENITAVATTNDLDIFQDKVN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide