RetrogeneDB ID:
retro_ecab_306
Organism:
Horse ( Equus_caballus )
Location:
14:3810179-3810990 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.3 %
Coverage:
91.75 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_306
GATATAAGCAATCTACCTGATAAAAAGTACAAAGTAATGGTCATGCTGATGCTCACTGAA
CTTGAGAGAAGAATAGATGAACACAGCAAGACCTTCAACAAAGAGTTAGAAGATATAAAA
AAGAACCAATCAGAGCTGAAGAATGCAATAATTGAAATGAAAAATTCTCTAGAGGGAGTT
GACAATAGAGTAGATGACACAGAAGAACGGATCAGTGATCTGGATGACAGCGTAGAGGAA
ATCATCAAGCTGAACAGAAAAAAGAATTTAAAAAAACGAGGATGGTTTAAGGGACCTCTG
GGACAACATTGAGCATACTAACATTTGCATTAGAGGTGTCCCAGGAGGAGAGGAGAGAGA
CAGAGGCAGAGAACTTATCTGAGGAAGTAACAGCTGAAAACTTCCCTAACCTGGGGAAGG
AAACAGACATCCAGATACAGGAAGCACAGAGAGCACCAAACAAGATAAACCCAAAGAGGC
CCACACCAAGACACATTATAACTAAAATGTCAAGAATCAAAGGTAAAGAGAGAATCTTAA
AAGCTGCAAGAGAAAAGCAACAAGTTATGTACAAGGCAACTCCCATAAGACTATCAGTTG
ACTTCTCTCAGCGGAAGCCTTACAGGCTAGAAGGGAGTCACACGATATATTCAAAGTGCT
GAAATGAAAAAACCTATGACCAAGAATCCTCTACCCAGCAAGGTTATCATTCAGAATGGA
AGGACAGATAAAGAGTTTTCCAGACAAGCGAAAACTAAAGGAGTTTGTCACCACTAAACC
AGCCTTACAAGAAATGTTGAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EISNLPDKVFKQKVKL-LTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERLEEVT-QAEQIKEKMK-KTDSLR
.ISNLPDK..K..V.L.LT.L.RR.DEHS..FNKELE.IKK.QSE.KN.I.EMKNSLEG...RVDDTEERIS.LD...EE...QAEQ.KE..K...D.LR
Retrocopy
DISNLPDKKYKVMVMLMLTELERRIDEHSKTFNKELEDIKKNQSELKNAIIEMKNSLEGVDNRVDDTEERISDLDDSVEEII/QAEQKKEFKK/NEDGLR


Parental protein
DLWDNIKCTKIRITGVP-EEEGDKGAEIYLIKI-AENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNKERILKAARERQQVTYK-GNS
DLWDNI..T.I.I.GVP.EE.....AE.......AENFP.L.KE.D.Q.QEAQ.APN.INPKR.TPRHII.K.S.....KERILKAARE.QQV.YK.GNS
Retrocopy
DLWDNIEHTNICIRGVP\EERRETEAENLSEEVTAENFPNLGKETDIQIQEAQRAPNKINPKRPTPRHIITKMSRI-KGKERILKAAREKQQVMYK/GNS


Parental protein
IR-LSADLSAETLQARRKWHSIFKVLNRKKP-PRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
....S..LSAE.LQARR..H.IFKVL..K...PRILY.AR.SF.MEG.IK.FPDK.KLKEF.T.KPALQEMLKGLI
Retrocopy
HKTIS*LLSAEALQARRESHDIFKVLK*KNL*PRILYPARLSFRMEGQIKSFPDKRKLKEFVTTKPALQEMLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide