RetrogeneDB ID:
retro_ecab_307
Organism:
Horse ( Equus_caballus )
Location:
14:6530940-6531181 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.33 %
Coverage:
54.3 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_307
GAGCTACTGGAGCAGATTCCCATATTCAACATGGCGACCTTCCCAGCAACATACGGCACC
ACAAAGATGAAGTGGCTGGGGATGTACTCAACGTGCTGCTCACATTTACTGCGTTTCAGC
TTTTAAAGATGCTTCTAGACTACCAGGCAGGAGAGGGAGGCCAGGACTAGATTTCAGCAG
TGGTTCAGGGGTGACTTTGTTGTGCAAATCATCTTTTATGCCACCTTCCCAGAAAAATCT
G

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.3

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QLVERIPGFNMAAFTTT-LQHHKDEVAGDIFDMLLTFTDFLAFKEMFLDYRAEKEGR-GLDLSSGLVVTSLCKSSSVPASQNSL
.L.E.IP.FNMA.F..T...HHKDEVAGD....LLTFT.F...K.M.LDY.A...G..GLD.SSG..VT.LCKSS..P.SQ..L
Retrocopy
ELLEQIPIFNMATFPAT/IRHHKDEVAGDVLNVLLTFTAFQLLK-MLLDYQAGEGGQ/GLDFSSGSGVTLLCKSSFMPPSQKNL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide