RetrogeneDB ID:
retro_ecab_309
Organism:
Horse ( Equus_caballus )
Location:
14:19826154-19826660 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.56 %
Coverage:
99.42 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_309
CCTCTAAAGAGAACAGTCCCCACGTTCATGGCAGGGATTTTGTGCTCAGTAGTTCAGAGG
TCTGCAGGCAAACTACAAACCGTGCCGAAAGGTGTGGAAGCTCTTGTTGTACGGATGGGA
TTCGTCACGGATTTTCCAAGTCAAGAATTCCAGATAAGGTGTTTCAGCCTTCACCTGCAG
ATCCTGACAAATACGGTGGGGATCCACAGCACCCTCATCCGCTACATATCGTCACCAGAA
TAAAAAGTACAAAAGGACGTCCATATCGGGAAAAAGATACAATAAAGATGCTTGGATTAG
AAAAAGCACATACTTCTCAGGTTCACAGAATATCCCCTCAGTGAATGCGAAACTGAAAGC
GGTGGAATGTTTGATAAGAATCAAGCTGCTGAAACTGCCACAAGTCACCCAGCAGAGGAA
GATGGGGGCAGGGTGTGCCCCAAGAGCACTGGGAGTTAGGAGTATGGGGGCAGCTAAACC
CTGTGGACCAGGAAACAATTAAGTCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PLKRTAPTLMAGVLRSIVQRPTGRLQTVTKGVESFI-CTNWIRHKFTRSRIPDKVFQPSPADHEKYGGDPQHPHKLHIVTRIKSTKRRPYWEKDIIKMLG
PLKRT.PT.MAG.L.S.VQR..G.LQTV.KGVE....CT..IRH.F..SRIPDKVFQPSPAD..KYGGDPQHPH.LHIVTRIKSTK.RPY.EKD.IKMLG
Retrocopy
PLKRTVPTFMAGILCSVVQRSAGKLQTVPKGVEALV/CTDGIRHGFSKSRIPDKVFQPSPADPDKYGGDPQHPHPLHIVTRIKSTKGRPYREKDTIKMLG


Parental protein
LEKAHTPQVHK-NIPSVNAKLKVVKHLIRIKPLRLPQ-GLPAEEDMSSTCLKSTG-ELVVGWRLSPVDQETIKS
LEKAHT.QVH..NIPSVNAKLK.V..LIRIK.L.LPQ...PAEED....C.KSTG.EL.V...L.PVDQETIKS
Retrocopy
LEKAHTSQVHR/NIPSVNAKLKAVECLIRIKLLKLPQ/SHPAEEDGGRVCPKSTG/ELGVWGQLNPVDQETIKS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide