RetrogeneDB ID:
retro_ecab_310
Organism:
Horse ( Equus_caballus )
Location:
14:36275289-36275589 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.61 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
CRIPT
Parental gene aliases:
No gene alias available
Parental gene description:
cysteine-rich PDZ-binding protein [Source:HGNC Symbol;Acc:14312]

Genomic region (view in browser)





>retro_ecab_310
ATGGTGTGCAAGAAGCGTGAAAAGAAAGTTGGAACTGTTATCATTCCAGATACATGGAAA
GATGGTCCAAGGAATACCACAGAAGTAGTGGAAGAAAGCCGAATGAAAATAAAGCTTTGA
CTTCAAAAAGCAAATTTCGATCCATATGGAAAGAATAAGTTCTCCACTTGCAGAATTTCT
GAAAGTTCTGTACACCAGCCATGTTCTCATTACTTCCATGGCTGTGCCTACAAAAAGGGC
ATCTGTGCCATGTGTGGGGAAAAGGTTTCAGAGACCAAAAACTACAAGCAAATATCTGTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVCEKCEKKLGTVITPDTWKDGARNTTE-SGGRKLNENKALTSKKARF-DPYGKNKFSTCRICKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDTKNYKQ
MVC.K.EKK.GTVI.PDTWKDG.RNTTE.S.GRK.NENKALTS.K..F.DPYGKNKFSTCRI..SSVHQP.SHY..GCAYKKGICAMCG.KV..TKNYKQ
Retrocopy
MVCKKREKKVGTVIIPDTWKDGPRNTTE/SSGRKPNENKALTS-KSKF\DPYGKNKFSTCRISESSVHQPCSHYFHGCAYKKGICAMCGEKVSETKNYKQ


Parental protein
TSV
.SV
Retrocopy
ISV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide