RetrogeneDB ID:
retro_ecab_311
Organism:
Horse ( Equus_caballus )
Location:
14:44635505-44635757 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.48 %
Coverage:
54.19 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
FXN
Parental gene aliases:
No gene alias available
Parental gene description:
frataxin [Source:HGNC Symbol;Acc:3951]

Genomic region (view in browser)





>retro_ecab_311
TTTGTTGAAAACCTTGCAAACAAACATTACAAATTTAATCACTGAGATGTCTCATTTGGG
AGTAGCATTTTAGTAATTAAGCTGGGTGGAGATATAGGAGTTTACAGGACCAACAAGCAG
ACCCCAAATAAGCAAATCTGGTTGTCTTCTTCATCCAGTGGTCCCCGGCATTATGATTCG
AATGGGAAAAACTCGGTGTATTCACACGACAGCATACCCCTCCATGAAGTGCTGTCCACA
GAGCTGACTGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FFEDLADKPYTFEDYDVSFGSGVLTIKMGGDLGTYVINKQTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGVSLHELLAAELTK
F.E.LA.K.Y.F...DVSFGS..L.IK.GGD.G.Y..NKQTPNKQIWLSS.SSGP..YD..GKN.VYSHD...LHE.L..ELT.
Retrocopy
FVENLANKHYKFNH*DVSFGSSILVIKLGGDIGVYRTNKQTPNKQIWLSSSSSGPRHYDSNGKNSVYSHDSIPLHEVLSTELTE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide