RetrogeneDB ID:
retro_ecab_312
Organism:
Horse ( Equus_caballus )
Location:
14:49127739-49128183 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.78 %
Coverage:
60.4 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS6
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S6 [Source:HGNC Symbol;Acc:10429]

Genomic region (view in browser)





>retro_ecab_312
GTGGATGCCAATCTGAATGTTTGTAACTTGGTTATTGCAAAAAGAAAAGGGGAGAAGGAC
ATTCCTGGGCTCACTGAGACTACTGTGCCTCATCTCCTGAGGCCCAAAAGTGCTAGTAGA
ATTTGTAAATTTTTCAGTCTCTCCAAAGAAGATGATGTCCATCAGTGTGTTGTGAGAAAG
CCCCGGAACAAAGAAGGTAAGCAAACCAGGACCCAAGAGCCCAAGATTCAGCATCTTGTT
GCTCCATATGTCCTGCAACACCAACGTCTGTGTATTGCTCTGAAGAAACAGCTACTAAGA
CAAACAAGGAAAGGTCACAGAATATGCTAAACTTATGGCCAAGAGAATGAAGGAGGTCAA
AGAAAAATGCCTGGAACAGATTGCCAAGGACAGAGGCTGTCGTCTCTGAGAGGTTCTACA
TCGAAGTTGCAGTCTAGTAAAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VDANLSVLNLVIVKKGEAGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQ-
VDANL.V.NLVI.K....GEKDIPGLT.TTVP..L.PK.ASRI.K.F.LSKEDDV.Q.VVRKP.NKEGK..RT..PKIQ.LV.P.VLQH.R..IALKKQ.
Retrocopy
VDANLNVCNLVIAKR--KGEKDIPGLTETTVPHLLRPKSASRICKFFSLSKEDDVHQCVVRKPRNKEGKQTRTQEPKIQHLVAPYVLQHQRLCIALKKQ/


Parental protein
RTKKNKE-EAAEYAKLLAKRMKEAKEKRQEQIAKRR-RLSSLRASTSKSESSQK
.TK.NKE....EYAKL.AKRMKE.KEK..EQIAK.R.RLSSLR.STSK..SS.K
Retrocopy
ATKTNKE/KVTEYAKLMAKRMKEVKEKCLEQIAKDR/RLSSLRGSTSKLQSSKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide