RetrogeneDB ID:
retro_ecab_313
Organism:
Horse ( Equus_caballus )
Location:
14:49433433-49433801 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.84 %
Coverage:
97.66 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
UBA52
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:RefSeq peptide;Acc:NP_001229382]

Genomic region (view in browser)





>retro_ecab_313
ATGCAGAGCTTTGTGAAGACCCTTGCAGGCAAGACCATTACCCTCAAGGTCAAGCCCAGT
GACACCATCAAGAATGTCAAAACCAAAATCCAAGACAAGGAAGGCATCTCACCTGACCAG
CAGCATCTGATGTTTGCAGGCAAAGAGAGGAAGCATGGTCAAACTCTCTCAGACAACAAC
ATCCAGAAAGAGTCCACCCTGTGCTTGGTGCTTCGTCTGGGGACAGCGTCATTAACCCTT
CCCACCACCATCTTGCCCAGAAATATAACTGCAACGAGATGATCCAGTGTTATGCTCGCC
TGCATCCCTACACTGTCGATTATTGCAAGAAGAAGTGCAGCCACACCACCAACCTGAGCC
CCAAGAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL-RGGIIEPSLRQLAQKYNCDKMICRKC
MQ.FVKTL.GKTITL.V.PSDTI.NVK.KIQDKEGI.PDQQ.L.FAGK....G.TLSD.NIQKESTL.LVLRL.....I.PS...LAQKYNC..MI...C
Retrocopy
MQSFVKTLAGKTITLKVKPSDTIKNVKTKIQDKEGISPDQQHLMFAGKERKHGQTLSDNNIQKESTLCLVLRL/GDSVINPSHHHLAQKYNCNEMI--QC


Parental protein
YARLHPRAVNCRKKKCGHTNNLRPKK
YARLHP..V...KKKC.HT.NL.PKK
Retrocopy
YARLHPYTVDYCKKKCSHTTNLSPKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide