RetrogeneDB ID:
retro_ecab_314
Organism:
Horse ( Equus_caballus )
Location:
14:49751152-49752749 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
71.61 %
Coverage:
51.54 %
Frameshifts:
6
Stop codons:
4
Parental gene:
Parental gene symbol:
UPF1
Parental gene aliases:
No gene alias available
Parental gene description:
UPF1 regulator of nonsense transcripts homolog (yeast) [Source:HGNC Symbol;Acc:9962]
Genomic region (view in browser)
>retro_ecab_314
ATTGAGAAGATCAGCACCAAAAGCCGCAAGACCATCGACTCCCTGGTGTCCTTCCTGGCC
CTGCAGAAACGGATCAGGAACATTGATAGATGGCATGCCAGAAGCTGCTGCTGCAGCTGA
AGGATGAGACTAGGGAGCTGTCATCTGCAGACAAGAAGCAGTACCCGGCCCTAAAGCACA
CTGCCAAGAGAGAGCAGCTCATCAAAGCAGATGTCATCTGCTGCACGTGGCTGGGTGCAG
ATGACCCAAGGTTCGCCAAGATGCAGTTCTGCTCCATTTTAATTGAGAGAAGTACTCAGG
CTGCCGAGCCAGAGTGCGTGGTCCCTGTGGTCCTCAGAGCCAAGCAGCTGATCCTCGTGG
GCAACCACTGCCAGCTAGGCCTCATGGTGATGCGCAAAAAGGCTGCCAGGGCTGCGCTGT
CCCAGTCACTCTTTGAGCACCTGGTGGTGTTGGGCATCCATGCCATCCGCCTCATCTGCC
TCTAGGTCCAGTATCGGATGCACGCTATGCTAAGCACCTTCCCACCCATCATCTTCTATG
AGGGCTCCCTTCAGAACAGCATCACTGCAGCAGATTGTGTGAAGGGGTCTGACTTTCAGT
AGCCCCAACCTGATAAACTGATGATCTACGTGACCCAGGGTGAGGAGGAGATGGCCAGCT
TGGGGACCTCCTACCTGAACAGGATGGAAGCTGCCAACATGGAGATCGCCATGAAGTTAC
TGAAAGCAGGTGCCAAGCCAGACCAGATTGACATCATCATGCCCTATGAGGGTTGGCGCT
CCTACCTGGTGCAGTACATGCACTTCATTGGCTCCCTGTACACCAAGCTCTACCAGGAGG
TGGAGATCGCCAGCATGGACACGTTCCAGGAGCATGAGAAGGACTTTGTCATCCTCTCCT
GCATGTGGGCAAATGAGCACCAAGGCATTGGGTTTTTAAACAACCCCAGGCAGTTTAATG
TGGCCCTGACCAGAGCACAATATGGAGTCATTATTGTGGGCAACCCAAAGGCCCTGCCCA
GGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTGCTGGTGAAGGAACCCCTGAATA
GCCTGTGGGAGAGCCCCATGCAGTTCAGCAAGCCCAGGGTGCTGGTCAACACCATCAATC
TGGGAGCCCTCTTCATGACAACAGCCACGTATGACCCCAGGAGGCCATTATCCCAGGATC
TGTCTATGATCAGAGCATCCAGGGCTGGCCCTTGAACACTACTTCCAGACCCACAATCAG
TGGGCACGATGAGTGCTGGGCCCAGCCATGTGGCCGCCGTGAGCACTCCCCATCCCCTTC
AACCTGCTCATGTCACCCATGCCACCACTGGGATATTTTGGACAAGCTAACAGGGCCAGC
AACAGGCCAGGACACCCCAAAAGGCAAAACTGGTTGTGGGAGATGCCAGAAGAACAACTT
TGAGCATCCTGGGCCCAGCCAGAGGAATCTCTCCAACAGCCAGTTCAGCCAGGACTTGGT
GTCACAGCTGTTTTCACAGGGCCCCCTGATGCCAGGCTACATCTCCATGAACTAGCCCTG
CTGGATGAGCTAGCCCGGCCTCTCCCAGCCCAAGGTA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.02 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.05 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
