RetrogeneDB ID:
retro_ecab_315
Organism:
Horse ( Equus_caballus )
Location:
14:50965288-50966263 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
79.27 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
COPS4
Parental gene aliases:
No gene alias available
Parental gene description:
COP9 signalosome subunit 4 [Source:HGNC Symbol;Acc:16702]

Genomic region (view in browser)





>retro_ecab_315
GCTGGAAGAAAGATGGCGGCAGCCGTGCGACAGGATTTGGCTCAGCTCATGAATTCGAGC
GGCTCTCATAAAGATCTGGCGGGCAAGTATCGCCAGATCCTGGAAAAAGCCATTCAGTTA
TCTGGGGCAGAACAACTAGAAGCTTTGAAAGCTTTTGTGGAAGCAATGGTAAATGAGAAT
GTCAGCCTCGTGATCTCTCGACAGTTGCTGACTGATTTCTGCACACATCTGCCTAACCTG
CCTGATAGCACAGCCAAAGAAATCTATCATTTCACCTTGGAGAAGATCCAGCCTAGAGTC
ATTTCATTTGAGGAGCAGGTTGCTTCCATAAGACAGCATCTTGCATCTATATATGAGAAA
GAAGAAGACTGGAGAAATGCAGCCCAAGTGTTGGTGGGAATTCCTTTGGAAACAGGACAA
AAACAGTACAATGTAGATTATAAACTGGAGACATACCTGAAGATTGCTAGGCTATATCTG
GAGGATGATGATCCCGTCCAGGCAGAGGCTTACATAAATCGAGCATCATTGCTTCAGAAT
GAATCAACCAACGAACAGTTACAGATACATTATAAGGTATGCTATGCACGTGTTCTTGAT
TACAGAAGAAAATTCATTGAAGCTGCACAAAGGTACAATGAGCTCTCTTACAAGACAATA
GTGCACGAAAGTGAAAGACTAGAGGCCTTAAAACATGCTTTGCACTGTACCATCTTAGCA
TCAGCAGGACAGCAGCGTTCTCGGATGCTAGCTACTCTTTTTAAGGATGAAAGGTGCCAG
CAGCTTGCTGCTTATGGGATCCTAGAGAAAATGTACCTAGATAGGATCATCAGAGGAAAT
CAACTTCAAGAATTTGCTGCCATGCTGATGCCTCACCAAAAAGCAACCACAGCTGATGGT
TCCAGCATTTTGGACAGAGCTGTTATTGAACACAATTTGTTGTCTGCAAGCAAATTATAT
AATAATATTACCTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.17
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.42
SRP021940_testis 1.07

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
AGRKMAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRV
AGRKMAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRV
Retrocopy
AGRKMAAAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPRV


Parental protein
ISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLD
ISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLD
Retrocopy
ISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLD


Parental protein
YRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADG
YRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADG
Retrocopy
YRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQRSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADG


Parental protein
SSILDRAVIEHNLLSASKLYNNITF
SSILDRAVIEHNLLSASKLYNNITF
Retrocopy
SSILDRAVIEHNLLSASKLYNNITF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide