RetrogeneDB ID:
retro_ecab_319
Organism:
Horse ( Equus_caballus )
Location:
14:70144526-70144854 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.18 %
Coverage:
57.44 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_319
GCCAATGCTAGAATGCCTGAGAAGGTAACCTGGATAAAGGGGATGAGAATGCTGCTGCTC
AGAAGATACTGTGAATCTAAGACGATTGACTACCACCTGTGTCACAGTCTGTACCAGAAG
GTGAAGGGGAATGTGTTCAAAATCAAGCAGATTCCCTTGAACACATCTGCAAGCTGAAGG
CAGACAAGGCCCACAAGAAGCTCCTGGCTAACCGGGCTGAGACCCACAGGTCTCAGACCA
AGGAAGCATACAAGCGCCAGAAGAGCAACTCCCAGCCAAGGAGGAGGAAATCATCAAAAT
TCTGCCTGAGGTGGAAGAGACTAAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRI-LMEHIHKLKADKARKKLLADQAEARRSKTKEARKRR-EERLQAKKE
ANARMPEKVTW...MR.L..LLRRY.ESK.ID.H..HSLY.KVKGNVFK.K.I...EHI.KLKADKA.KKLLA..AE..RS.TKEA.KR..EE.L.AK.E
Retrocopy
ANARMPEKVTWIKGMRML--LLRRYCESKTIDYHLCHSLYQKVKGNVFKIKQI/SLEHICKLKADKAHKKLLANRAETHRSQTKEAYKRQ/EEQLPAKEE


Parental protein
EIIKTLSKEEETKK
EIIK.L...EETKK
Retrocopy
EIIKILPEVEETKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide