RetrogeneDB ID:
retro_ecab_320
Organism:
Horse ( Equus_caballus )
Location:
14:80441767-80442501 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.69 %
Coverage:
80.39 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
DGAT2
Parental gene aliases:
No gene alias available
Parental gene description:
diacylglycerol O-acyltransferase 2 [Source:HGNC Symbol;Acc:16940]

Genomic region (view in browser)





>retro_ecab_320
GAGCTGGTGAAGACGCACAACCTGCTCACCACCAGGAACTACATCTTTGGGTACCACCCC
ACGGCATCATGGGCCTCAGTGCCTTCTGCTACTTCAGCACAGAGGCCACGGAAGTGAGCA
AGAAGTTCCCTGGCATACGGCCCCACCTGGCCACGCTGGCCGGCAGCTTCCGGAGGCCAG
TGCTGAGGGAGTACATGGTGTCTGGAGGCATCTGCCCTGTGAACCAGGACACAGTAGACT
TGCTTTCAAAGAATGGGAGTGGCAATGCCATCATCCTCGTTGTGGGGGGCGCGGCCGAGT
CCCTGAGCTCCATGCCCGGCAAGAACGCGGTCACCCTGCGCCACCGCAAGGGCTTAGTGA
AACTGGCTCTGCGCCATGGAGCCGATCTGGTTCCTTTCTACTCCTTCGGGGAGAACGAGG
TGTACAAGCAGGTAATCTTTGAGGAGGGCTCCTGGGGCCGCTGGGTCCAGAAGAAGTTCC
AGAGGTACATCGGCTTCGCCCGGTGCATTTTCCATGGCCGAGGCCTCTTCTCCTCTGACA
CCTGGGGGCTCCTGCCCTACCCGAAGCCCATCACCTCCGTCGTGGGTGAGCCCATCACCA
TCCCCAAGCTGGAGCACCCAACCCAGCAGGACATCGACCTGTACCACACCATGTACATGG
AGGCCCTGGTGAACCCCTTCTACAGGCACAAGACCAAGTCTGGCCTCCCGGGGACTGAGG
TCCTGGAGTGAACT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QLVKTHNLLTTRNYIFGYHP-HGIMGLGAFCNFSTEATEVSKKFPGIRPYLATLAGNFRMPVLREYLMSGGICPVNQDTIDYLLSKNGSGNAIIIVVGGA
.LVKTHNLLTTRNYIFGYHP.HGIMGL.AFC.FSTEATEVSKKFPGIRP.LATLAG.FR.PVLREY..SGGICPVNQDT.D.LLSKNGSGNAII.VVGGA
Retrocopy
ELVKTHNLLTTRNYIFGYHP/HGIMGLSAFCYFSTEATEVSKKFPGIRPHLATLAGSFRRPVLREYMVSGGICPVNQDTVD-LLSKNGSGNAIILVVGGA


Parental protein
AESLSSMPGKNAVTLRHRKGFVKLALRHGADLVPIYSFGENEVYKQVIFEEGSWGRWVQKKFQKYIGFAPCIFHGRGLFSSDTWGLLPYPKPITTVVGEP
AESLSSMPGKNAVTLRHRKG.VKLALRHGADLVP.YSFGENEVYKQVIFEEGSWGRWVQKKFQ.YIGFA.CIFHGRGLFSSDTWGLLPYPKPIT.VVGEP
Retrocopy
AESLSSMPGKNAVTLRHRKGLVKLALRHGADLVPFYSFGENEVYKQVIFEEGSWGRWVQKKFQRYIGFARCIFHGRGLFSSDTWGLLPYPKPITSVVGEP


Parental protein
ITIPKLEHPTQQDIDLYHAMYMEALVNLFDRHKTKFGLPETEVLEVT
ITIPKLEHPTQQDIDLYH.MYMEALVN.F.RHKTK.GLP.TEVLE.T
Retrocopy
ITIPKLEHPTQQDIDLYHTMYMEALVNPFYRHKTKSGLPGTEVLE*T


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide