RetrogeneDB ID:
retro_ecab_321
Organism:
Horse ( Equus_caballus )
Location:
14:88788360-88788645 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.13 %
Coverage:
62.09 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
SAP18
Parental gene aliases:
No gene alias available
Parental gene description:
Sin3A-associated protein, 18kDa [Source:HGNC Symbol;Acc:10530]

Genomic region (view in browser)





>retro_ecab_321
GGTCTCCTGAGGGCCAGCAGGCAGCAGATCTACATTTGAATGGATGCAACCTTGAAAGAA
GTGACTAGTTTAGTAAAAGAAGTCTACCCAGAGGCTAGAAAGAAAGCCATATGCTTCAAT
TTTGTAATTATTTTTTACAGATCTTAAAAGACCTGGCCCTGGAGTAAAGGAGATTGGCAG
CACGATGTCTGGCAGAAAGGGGACCGATGATTCATGACGCTGCAGGCACAGGAGTGCCAA
ACAGGGGGTTATTCAGATGCAGCAAAAACTCCTCCAAATCAGAGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIV-FTDLKRPGYRVKEIGSTMSGRKGTDDS-MTLQSQKFQIGDYLDIAITPPNRA
G....S..QIY..MDATLKE.TSLVKEVYPEARKK...FNF.I..FTDLKRPG..VKEIGSTMSGRKGTDDS.MTLQ.Q..Q.G.Y.D.A.TPPN..
Retrocopy
GLLRASRQQIYI*MDATLKEVTSLVKEVYPEARKKAICFNFVII\FTDLKRPGPGVKEIGSTMSGRKGTDDS/MTLQAQECQTGGYSDAAKTPPNQS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide