RetrogeneDB ID:
retro_ecab_322
Organism:
Horse ( Equus_caballus )
Location:
14:89415287-89415880 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
64.68 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_322
TTAGAGGACAGTAATATAGAAATGCTTCAGAGGGAGAAGAGAGAACTAAGACTAAAAAGT
AATGAAGAAACTCTCAGAGAAACATCTGACTCAATTAGGAAATACAACATAAGGATTATA
GCTATTCCAGAGGGAGAAGGGAAGGAGAATCGAGCAGAAAGCTTGTTCAAAGAAATAATA
GCAGAGAACTTTCCAAACCTGGAGAAAGAGGTAGAAATACAAGTGAATGAAGACAACAGA
TCTCCTGATTACATCAATGTAAAAAGACCTACTGCAAGGCATAGAGCAGTAAAGCTGGCA
AAAGTCAATGACAAAGAAAATATACTAAGGGCAGCAAGGCAGAAGAAAATAACTTACAAA
GGAATCCCTATCAGGCTTTCAACGGATTTCTCAGCATAAACCTTACAAGCTAGATGAGCG
AAACGATATACTCAAAATTCTGAAAGACAAAAACTTTTGGAAAAGAACACTCTATCCAGT
GAAACTATCCCTCCAGATACAATGGAGAAATAAAAACTTTCCCAGATAAACAAAAGCAAA
TGGAGTTCATCACCACAAGACCCCCCCTACAAGAGACCCTCAAGAAGGCCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LEDRNTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKL
LED.N.EML...E.RELRLK..E....E....IRK.NIRII.IP.GE...NR.ESLFKEII.ENF.NL.K..EIQV.E.NR.P.YINV.RP..RH..VKL
Retrocopy
LEDSNIEMLQ-REKRELRLKSNEETLRETSDSIRKYNIRIIAIPEGEGKENRAESLFKEIIAENFPNLEKEVEIQVNEDNRSPDYINVKRPTARHRAVKL


Parental protein
AKLVMKEYIMAEAARQKKITYKGSPIRLSADFSQTVQTRR-EWNDIIKILKYKNYPPRILYPVKLSF-RYGREIKAFQDKQKLREFITTRPPLQEMMKTA
AK...KE.I...AARQKKITYKG.PIRLS.DFS......R.E.NDI.KILK.KN...R.LYPVKLS..RY..EIK.F.DKQK..EFITTRPPLQE..K.A
Retrocopy
AKVNDKENIL-RAARQKKITYKGIPIRLSTDFSA*TLQAR\ERNDILKILKDKNFWKRTLYPVKLSL\RYNGEIKTFPDKQKQMEFITTRPPLQETLKKA


Parental protein
L
L
Retrocopy
L


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide