RetrogeneDB ID:
retro_ecab_324
Organism:
Horse ( Equus_caballus )
Location:
15:15501899-15502705 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
98.52 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Genomic region (view in browser)
>retro_ecab_324
GCAACAAAGGTTTTGGGAACAGTAAAATGGCTCAATGTAAGAAACGGATATGGTTTCATC
AACAGGAATGACACCAAGGAAGATGTATTTGTACACCAGACTGCCATAAAGAAGAATAAC
CCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGTTGAA
GGAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGTCCTGGTGGAGTTCCAGTGCAAGGA
GTAAATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGCAGGGGTCCTCCAC
GCAGTTACCAGCAGAATTACCAGAATAGTGAGAGTGGGGGAAAGAATGAGGGATCGGAGA
GCGCTCCCGAAGGCCAGGCCCAACAGCGCCGGCCCTACCGCAGGCGACGGTTCCCACCTT
ACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAAGGAG
AAGTGATGGAGGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGGCAGA
ATATGTATCGGGGTTATAGACCACGATTCCGCAGGGGCCCTCCTCGCCAAAGACAGCCTA
GAGAGGATGGCAATGAAGAAGATAAGGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGC
CACCTCAACGTCGGTACCGCCGCAACTTCAATTACCGACGCAGACGCCCAGAAAACCCTA
AACCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTC
CCGAGGCTGAGCAGGGCGGGGCTGAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.15 |
| SRP021940_embryo | 1.39 |
| SRP021940_placental_villous | 0.54 |
| SRP021940_synovial_membrane | 0.89 |
| SRP021940_testis | 3.44 |
Parental protein coverage
Changes in the retrocopy sequence
