RetrogeneDB ID:
retro_ecab_326
Organism:
Horse ( Equus_caballus )
Location:
15:21221752-21222130 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
53.17 %
Coverage:
72.94 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_326
AGAATAAAAGAAAAAGATAAATTTCCAGAAATTGATCTTAATGAAATGGAGACAAGTCAT
TTACATGATGGAGAGTTCAAAATAGTGGTCATAAAGATGTTCACTGAGGTCAGGAGAGCA
ATGCAGGAAAAAAGTGAGAATTTCAACAAAGAAAGAGAAAATATAAAAAAGTAGGAAACA
GAAATCATAGAGTTGAAGAATAAAATAGCTAAATTAAAAAATTCAATAGAGGCATTCAAC
AGCCAATTAGATCAAGAAGATGAAAGAAGCAGCAAACTCAAAGACAATGCAGTAGAATTC
ATCTAATCTGAGGATCAAAAAGAAAAAAGAATGACAAAGAGTGAAACCAGCTTAGGAGAA
TTATGGGACACCATAAGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QMKEQDK-PENNLNEMEVSNLPNKEFQVKVIKMLTKLKRRMDEHSGNFNKETDSIRKCQIEVTELKNTIPELTNTLEGFNSRLDEAEERISELNDRA-EL
..KE.DK.PE..LNEME.S.L...EF...VIKM.T...R.M.E.S.NFNKE...I.K...E..ELKN.I..L.N..E.FNS.LD...ER.S.L.D.A.E.
Retrocopy
RIKEKDKFPEIDLNEMETSHLHDGEFKIVVIKMFTEVRRAMQEKSENFNKERENIKK*ETEIIELKNKIAKLKNSIEAFNSQLDQEDERSSKLKDNAVEF


Parental protein
TQSEQQKEKRMKNTDNSLRELWDNIK
..SE.QKEKRM.....SL.ELWD.I.
Retrocopy
I*SEDQKEKRMTKSETSLGELWDTIR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide