RetrogeneDB ID:
retro_ecab_327
Organism:
Horse ( Equus_caballus )
Location:
15:29518722-29519302 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
55.61 %
Coverage:
97.99 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_327
AATGTAGAAATTCTACGGATGGAAGAGGAGACAGAACTAAGATTGTAAAAAAAGAAGAAA
TTCTTTGAGAAATATCTGATTCAATTAGGAAAAGCAACATAAGGATTATATATCCCAGAG
GAAGAAGAGAGGGAGAAAGGAGCAGAGAGTTTGTTCAAAGAACTAATTGCTGAGAACGTC
CCAAACATGGGGATGGTTTCAGATTTACAGATAAACGAAGTTAACCGAAGGCCTACCTTT
ATCAACATAAAAAGACCCTTTCCAAGGCATATAATATTGAAAATGGCAAAAGTCTGGGAT
AAAGAAAGAATATCAGGAGCAGCAAGGCAGGAGAAAATAACTTACAAAGGAAACCCTATG
AGGCTTTCAGCAGATTGCTCAGCAGAACCTACAAGCTAGGAGAGAATGGAACGATATATT
CAACATACTGAAAGACAAAAACTTTCTGCCGAGAACACTCCATCCAGCCAAACTTTCCTT
CAGATACGATGGAGAAATAAAAGTTTTCTCAGATAAACAAAAGCTGAGGGAGTTCATCGC
CACTAGACTTCCCCTACAAGAAATAATTCAAGATGTCCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.19
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.3

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NTEMLKMEEERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKLAKLV
N.E.L.MEEE.ELRL......F........K.......IP..EER....ESLFKE.I.EN..N.G.....Q..E.NR.P..IN..RP.PRHI..K.AK..
Retrocopy
NVEILRMEEETELRL*KKKKFFEKYLIQLGKAT*GLY-IPEEEEREKGAESLFKELIAENVPNMGMVSDLQINEVNRRPTFINIKRPFPRHIILKMAKVW


Parental protein
MKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTAL
.KE.I...AARQ.KITYKG.P.RLSAD.S.Q..Q.RREWNDI..ILK.KN..PR.L.P.KLSFRY..EIK.F.DKQKLREFI.TR.PLQE.....L
Retrocopy
DKERISG-AARQEKITYKGNPMRLSADCS\QNLQARREWNDIFNILKDKNFLPRTLHPAKLSFRYDGEIKVFSDKQKLREFIATRLPLQEIIQDVL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide