RetrogeneDB ID:
retro_ecab_329
Organism:
Horse ( Equus_caballus )
Location:
15:43291114-43291350 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.0 %
Coverage:
59.85 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
POMP
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome maturation protein [Source:HGNC Symbol;Acc:20330]

Genomic region (view in browser)





>retro_ecab_329
AATATACAGCTCAACCAAAGTAAAATGAATTTATACACATTAAGAAACAACCAAGGTCTA
TTTGCTCTACTAAAATTACAAATGGAATTCAAGACAGCACCGCATGTTCAGTATCTTCCA
TTTTTTCCTAGCTCAAATCTTTCACTGGCTATTTTGAGGGTAATGCTGAGACTAATGATT
TTTAAGACATTTTTAATGATTCATCACAAAATAAAATAATGGAAGAACCCCACTTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NFQLNQDKMNFSTLRNIQGLFAPLKLQMEFKAVQQVQRLPFLPSSNLSLDILR-GNAETIGFEDILNDPAQSELMGEPHL
N.QLNQ.KMN..TLRN.QGLFA.LKLQMEFK....VQ.LPF.PSSNLSL.ILR.GNAET..F.DI.ND..Q...M.EPHL
Retrocopy
NIQLNQSKMNLYTLRNNQGLFALLKLQMEFKTAPHVQYLPFFPSSNLSLAILR/GNAETNDF*DIFNDSSQNKIMEEPHL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide