RetrogeneDB ID:
retro_ecab_33
Organism:
Horse ( Equus_caballus )
Location:
1:144481370-144481937 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.81 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_33
ATGAATACAAGAATGGGCTATGGTAGCATGGTGAATTCCAGACAAGCCCGAGAATTCCAT
ACAGCTGGAGAAAGAGGCCCAACTCCTCAGACAGTCTTGGAAGCAGAACTGATAGAACTT
GGGGAAAGTGATGAAGTAGTTGACCTCACCTGTGAATCTCTAGAACCTGCAGTGATTGAC
CTAACTCACCAGGACTGTGTTGTGATTACTGAAGAAAGGAGGCGGCCAAGGGGAAACACA
AGGTCACTCCAAGGCCAAACTGGCAGCTGTGTGGTGAGCAGTGATAAGGAATTGATGAGG
GACAGAGATGTATATGTGACCCATAGTGCCTACCATAATGCCCTGGAAGAAGAAACTTTA
AGTTGCACACTACCTGGTTATATCCAGTGTCGAATTTGTATGGATGGGTACTCGGAGATT
GAATTGAGTAGACGGCACATCTACTCTACAGACTGTGGCCACATCTTCTGTAGTCAGTGC
CTCTGTACTTCCCTTAAATATACTAAAACTTGCCCAGTTTGTTTGAAAAAAATTGGCTGC
CGTCAGTACCATCGTATTTATTTATGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 1.45
SRP021940_cerebellum 1.54
SRP021940_embryo 0.26
SRP021940_placental_villous 5.5
SRP021940_synovial_membrane 4.35
SRP021940_testis 1.01

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSTRKRRGGTVNSRQAQK--RTREAASTPEMALEAEPIELVESAGDEIVDLTCESLEPVVVDLTHNDSVVIVDERRRPRRNARRLRQDHADSCVVSSDDE
M.TR...G..VNSRQA.......E...TP...LEAE.IEL.ES..DE.VDLTCESLEP.V.DLTH.D.VVI..ERRRPR.N.R.L.Q....SCVVSSD..
Retrocopy
MNTRMGYGSMVNSRQAREFHTAGERGPTPQTVLEAELIELGES--DEVVDLTCESLEPAVIDLTHQDCVVITEERRRPRGNTRSL-QGQTGSCVVSSD-K


Parental protein
ELSRDRDVYVTTHTPRNTREEAATGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI
EL.RDRDVYVT.....N..EE........G...C.ICMDGYSEI....R.I.ST.CGH.FCSQCL..SLK...TCP.C.KKI....YH.IY.
Retrocopy
ELMRDRDVYVTHSAYHNALEEETLSCTLPGYIQCRICMDGYSEIELSRRHIYSTDCGHIFCSQCLCTSLKYTKTCPVCLKKIGCRQYHRIYL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide