RetrogeneDB ID:
retro_ecab_330
Organism:
Horse ( Equus_caballus )
Location:
15:48805092-48806178 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
88.56 %
Coverage:
65.59 %
Frameshifts:
2
Stop codons:
0
Parental gene:
Parental gene symbol:
PTBP1
Parental gene aliases:
No gene alias available
Parental gene description:
polypyrimidine tract binding protein 1 [Source:HGNC Symbol;Acc:9583]
Genomic region (view in browser)
>retro_ecab_330
TTCTACCCGGTGACCCTGGACGTGCTCCACCAGATCTTCTCCAAGTTCGGCACGGTGCTG
AAGATCATCACCTTCACCAGGAACAACCAGTTCCAGGCGCTGCTGCAGTACGCGGAGGCT
GTGAGCGCGCAGCACGCCAAGCTGTCGCTGGACGGCCAGAACGTCTACAACGCCTGCTCC
ACGCTGCGCATCGACTTCTCCAAGCTCACCAGCCTCAACGTCAAGCACAAGAGCGGCGAC
TACGCGCGCCCCGACCTGCCCTCGGGCGACAGCCAGCCTTCGCTGAACCAGACCATGGCC
GAGCCTTTCGTTGCGCTTGGTATAATGTCAGCCTCTCCATATGCAGGAGCTGGTTTCTCT
CCCACCTTTGCCAGTCCTCAAGCCGCAGGCCTCTCTGTTTCCCAACGTGCACGGGGCATT
GGCCCCCCGGCCATTCCCGTCCGCGGCGCAGCGGCAGCAGCGGGCAGGATCGCCTCTCCC
GGACCTGGCTGGGCCGGGAACTCCGTGCTGCTGGTCAGCAACCTGAACCCCGAGAGAGTC
ACACCCCAAAGCCTCTTTATTCTTTTCAGCGTGTACGGTGACATGCAGCGGGTGAAGATC
CTCTTCAACAAGAAGGAGAACGCGCTGGTGCAGATGGCCGACGGCAGCCAGGCCCAGCTG
GCCATGAGCCACCTCAACGGGCACAAGCTGCACGGGAAGCCGGTGCGCATCACGGCGTCC
AAGCACCAGAACGTGCAGCTGCCCCGCGAGGGCCAGGAGGACCAGGGCCTCACCAAGGAC
TACGGTAGCTCGCCGCTGCACCGCTTCAAGAAACTGGGCTCCAAGAACTTCCAGAACATC
TTCCCGCCCTCCGCCATCCTGCACCTCTCCAACATCCCGCCATCCAAATCCGAGGACGAC
CTCAAGATCCTCTTCTCCAGCAACGGCGGGATTGTCAAGGGGTTCAAGTTCTTCCAGAAG
GACCAGAAGATGGCGTTGATCCAGATGGGCTCGGTGGAGGACGCGATCCTGGCGCTCATC
AACCTGTACAACCACGACCTGGGCGAGAACCACCACCTGCGGGTCTCCTTCTCCAAGTCC
ACCATC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 2.67 |
| SRP021940_cerebellum | 1.0 |
| SRP021940_embryo | 8.03 |
| SRP021940_placental_villous | 2.28 |
| SRP021940_synovial_membrane | 4.22 |
| SRP021940_testis | 2.91 |
Parental protein coverage
Changes in the retrocopy sequence
